* installing *source* package ‘BayesTree’ ... ** package ‘BayesTree’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BayesTree/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c BirthDeath.cpp -o BirthDeath.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ChangeRule.cpp -o ChangeRule.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Funs.cpp -o Funs.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Lib.cpp -o Lib.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Likelihood.cpp -o Likelihood.o Lib.cpp: In static member function 'static void Lib::sortedUnique(int, double*, Vec&)': Lib.cpp:89:11: warning: unused variable 'nu' [-Wunused-variable] 89 | vec_sz nu = 1; | ^~ Lib.cpp: In static member function 'static void Lib::acov(Vec&, int, Vec&, bool)': Lib.cpp:114:32: warning: typedef 'ST' locally defined but not used [-Wunused-local-typedefs] 114 | typedef Vec::size_type ST; | ^~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c List.cpp -o List.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c MuS.cpp -o MuS.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Node.cpp -o Node.o Node.cpp: In member function 'void Node::currentFits(MuS*, int, double**, double*, int, double**, double*, double**)': Node.cpp:629:60: warning: 'indPartTest' may be used uninitialized [-Wmaybe-uninitialized] 629 | for(int j=1;j<=nTest;j++) {if(indPartTest[j]==i) fits[2][j]=nodeMu; } | ~~~~~~~~~~~~~^ Node.cpp:602:14: note: 'indPartTest' was declared here 602 | int* indPartTest; | ^~~~~~~~~~~ g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Prior.cpp -o Prior.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Rlob.cpp -o Rlob.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Swap.cpp -o Swap.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mbart.cpp -o mbart.o mbart.cpp: In function 'void mbart(int*, int*, int*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*, int*, int*, int*, int*, double*, double*, double*, int*)': mbart.cpp:386:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 386 | if(!binary) sdraw[scnt] = sd.getS(); scnt++; | ^~ mbart.cpp:386:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 386 | if(!binary) sdraw[scnt] = sd.getS(); scnt++; | ^~~~ mbart.cpp:300:11: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] 300 | double alpha=0.0; | ^~~~~ g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o BayesTree.so BirthDeath.o ChangeRule.o Funs.o Lib.o Likelihood.o List.o MuS.o Node.o Prior.o Rlob.o Swap.o mbart.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BayesTree/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/BayesTree/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/BayesTree/src' installing to /data/gannet/ripley/R/packages/tests-devel/BayesTree.Rcheck/00LOCK-BayesTree/00new/BayesTree/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesTree)