* installing *source* package ‘Apollonius’ ...
** package ‘Apollonius’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -DCGAL_HEADER_ONLY=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Apollonius.cpp -o Apollonius.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/boost_mp.h:32,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Number_types/internal/Exact_type_selector.h:27,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_kernel_selector.h:26,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Filtered_kernel.h:22,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21,
                 from Apollonius.cpp:7:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
  714 |                else if (x == BOOST_FLOAT128_C(0.0))
      |                ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
  717 |                if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
      |                ^~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -DCGAL_HEADER_ONLY=1  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/property_map.h:18,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Spatial_sort_traits_adapter_2.h:19,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Triangulation_2.h:38,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Apollonius_graph_2.h:34,
                 from Apollonius.cpp:3:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/local/gcc13/include/c++/13.2.0/bits/std_thread.h:43,
                 from /usr/local/gcc13/include/c++/13.2.0/thread:45,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:425,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/license/Apollonius_graph_2.h:17,
                 from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Apollonius_graph_2.h:18:
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  508 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  521 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  604 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  613 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  615 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
/usr/local/gcc13/include/c++/13.2.0/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o Apollonius.so Apollonius.o RcppExports.o -lmpfr -lgmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Apollonius.Rcheck/00LOCK-Apollonius/00new/Apollonius/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Apollonius)