* installing *source* package ‘ARCokrig’ ...
** package ‘ARCokrig’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ARCokrig/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -DNDEBUG -DARMA_NO_DEBUG -DEIGEN_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fopenmp -DNDEBUG -DARMA_NO_DEBUG -DEIGEN_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cpp -o utils.o
utils.cpp: In function 'void expcor_deriv(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >, int)':
utils.cpp:40:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
40 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:41:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
41 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:43:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
43 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void matern_3_2_cor_deriv(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >, int)':
utils.cpp:101:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
101 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:102:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
102 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:104:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
104 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void matern_5_2_cor_deriv(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >, int)':
utils.cpp:166:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
166 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:167:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
167 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:169:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
169 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void sqexpcor_deriv(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >, int)':
utils.cpp:231:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
231 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:232:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
232 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:234:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
234 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void powercor_deriv(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >, int)':
utils.cpp:254:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
254 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:255:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
255 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:257:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
257 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void expcor(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:555:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
555 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:556:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
556 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:558:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
558 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void expcor_nonsep(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:573:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
573 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:574:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
574 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:576:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
576 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void matern_3_2_cor(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:591:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
591 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:592:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
592 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:594:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
594 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void matern_3_2_cor_nonsep(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:611:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
611 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:612:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
612 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:614:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
614 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void matern_5_2_cor(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:629:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
629 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:630:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
630 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:632:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
632 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void matern_5_2_cor_nonsep(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:649:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
649 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:650:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
650 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:652:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
652 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void sqexpcor(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:668:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
668 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:669:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
669 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:671:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
671 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'void powercor(Eigen::Ref<Eigen::Matrix<double, -1, 1> >, arma::cube&, Eigen::Ref<Eigen::Matrix<double, -1, -1> >)':
utils.cpp:688:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
688 | for(i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:689:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
689 | for(j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:691:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
691 | for(k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
utils.cpp: In function 'Eigen::MatrixXd buildcov(Eigen::VectorXd&, arma::cube&, const Rcpp::String&, const bool&)':
utils.cpp:730:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
730 | for(int i=0; i<dist.n_rows; i++){
| ~^~~~~~~~~~~~
utils.cpp:731:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
731 | for(int j=0; j<dist.n_cols; j++){
| ~^~~~~~~~~~~~
utils.cpp:733:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
733 | for(int k=0; k<dist.n_slices; k++){
| ~^~~~~~~~~~~~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o ARCokrig.so RcppExports.o utils.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ARCokrig/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ARCokrig/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ARCokrig/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ARCokrig.Rcheck/00LOCK-ARCokrig/00new/ARCokrig/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ARCokrig)