* installing *source* package ‘vapour’ ... ** package ‘vapour’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: /usr/local/clang18/bin/clang configure: CXX: /usr/local/clang18/bin/clang++ -std=gnu++17 checking for gdal-config... /usr/local/clang/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.4.3 checking GDAL version >= 2.0.1... yes checking for gcc... /usr/local/clang18/bin/clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/local/clang18/bin/clang accepts -g... yes checking for /usr/local/clang18/bin/clang option to accept ISO C89... none needed checking how to run the C preprocessor... /usr/local/clang18/bin/clang -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gdal.h usability... yes checking gdal.h presence... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available for running:... yes configure: GDAL: 3.4.3 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 8.2.1 configure: LIBS: -L/usr/local/lib64 -lproj -L/usr/local/clang/lib64 -lgdal checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes configure: Package CPP flags: -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include configure: Package LIBS: -L/usr/local/clang/lib64 -lgdal -L/usr/local/lib64 -lproj configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/vapour/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 000-stream.cpp -o 000-stream.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 000-warpgeneral.cpp -o 000-warpgeneral.o In file included from 000-warpgeneral.cpp:2: ../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable] 537 | int warncount = 0; | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 00_config.cpp -o 00_config.o In file included from 00_config.cpp:2: ../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable] 537 | int warncount = 0; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 00_gdal.cpp -o 00_gdal.o 1 warning generated. In file included from 00_gdal.cpp:2: ../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable] 537 | int warncount = 0; | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 00_geometry.cpp -o 00_geometry.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 00_raster.cpp -o 00_raster.o In file included from 00_raster.cpp:2: ../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable] 537 | int warncount = 0; | ^ In file included from 00_geometry.cpp:2: In file included from ../inst/include/gdalgeometry/gdalgeometry.h:11: ../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable] 537 | int warncount = 0; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 00_raster_block_io.cpp -o 00_raster_block_io.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 00_utils.cpp -o 00_utils.o 1 warning generated. 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c 00_vrt.cpp -o 00_vrt.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/clang/include -I../inst/include/ -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c warp_file.cpp -o warp_file.o In file included from 00_raster_block_io.cpp:2: In file included from ../inst/include/gdalreadwrite/gdalreadwrite.h:8: ../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable] 537 | int warncount = 0; | ^ 00_raster_block_io.cpp:69:10: warning: variable 'err' set but not used [-Wunused-but-set-variable] 69 | CPLErr err; | ^ 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o vapour.so 000-stream.o 000-warpgeneral.o 00_config.o 00_gdal.o 00_geometry.o 00_raster.o 00_raster_block_io.o 00_utils.o 00_vrt.o RcppExports.o warp_file.o -L/usr/local/clang/lib64 -lgdal -L/usr/local/lib64 -lproj make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/vapour/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/vapour/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/vapour/src' installing to /data/gannet/ripley/R/packages/tests-clang/vapour.Rcheck/00LOCK-vapour/00new/vapour/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vapour)