* installing *source* package ‘unigd’ ... ** package ‘unigd’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread Using PKG_LIBS=-lcairo -lfreetype Using PKG_LIBTIFF_CFLAGS= Using PKG_LIBTIFF_LIBS=-ltiff -ltiffxx ------------------------------[ WARNING ]--------------------------- Info: Configuration failed to find libtiff-4 system library. httpgd is fully functional without libtiff-4, but some plot file formats will not be available. If you want to install libtiff-4 see below error for troubleshooting. ------------------------- ANTICONF ERROR --------------------------- Configuration failed because libtiff-4 was not found. Try installing: * deb: libtiff-dev (Debian, Ubuntu, etc) * rpm: libtiff-devel (Fedora, EPEL) * brew: libtiff (OSX) If libtiff-4 is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libtiff-4.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------------------------------------------------- ** libs using C++ compiler: ‘clang version 18.1.4’ using C++14 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src' rm -f unigd.so base_64.o compress.o cpp11.o draw_data.o page_store.o plot_history.o r_thread_posix.o r_thread_win32.o renderer_cairo.o renderer_json.o renderer_meta.o renderer_strings.o renderer_svg.o renderer_tikz.o renderers.o unigd.o unigd_dev.o unigd_external.o uuid.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c base_64.cpp -o base_64.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c compress.cpp -o compress.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cpp11.cpp -o cpp11.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c draw_data.cpp -o draw_data.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c page_store.cpp -o page_store.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c plot_history.cpp -o plot_history.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c r_thread_posix.cpp -o r_thread_posix.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c r_thread_win32.cpp -o r_thread_win32.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c renderer_cairo.cpp -o renderer_cairo.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c renderer_json.cpp -o renderer_json.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c renderer_meta.cpp -o renderer_meta.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c renderer_strings.cpp -o renderer_strings.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c renderer_svg.cpp -o renderer_svg.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c renderer_tikz.cpp -o renderer_tikz.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c renderers.cpp -o renderers.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c unigd.cpp -o unigd.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c unigd_dev.cpp -o unigd_dev.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c unigd_external.cpp -o unigd_external.o /usr/local/clang18/bin/clang++ -std=gnu++14 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/libxml2 -I/usr/include/pixman-1 -pthread -DUNIGD_NO_TIFF -Ilib -I../inst/include -DFMT_HEADER_ONLY -I'/data/gannet/ripley/R/test-clang/cpp11/include' -I'/data/gannet/ripley/R/test-clang/systemfonts/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c uuid.cpp -o uuid.o /usr/local/clang18/bin/clang++ -std=gnu++14 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o unigd.so base_64.o compress.o cpp11.o draw_data.o page_store.o plot_history.o r_thread_posix.o r_thread_win32.o renderer_cairo.o renderer_json.o renderer_meta.o renderer_strings.o renderer_svg.o renderer_tikz.o renderers.o unigd.o unigd_dev.o unigd_external.o uuid.o -lcairo -lfreetype -lpng -lz make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/unigd/src' installing to /data/gannet/ripley/R/packages/tests-clang/unigd.Rcheck/00LOCK-unigd/00new/unigd/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (unigd)