* installing *source* package ‘thor’ ...
** package ‘thor’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -Ilmdb -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lmdb/mdb.c -o lmdb/mdb.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -Ilmdb -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c lmdb/midl.c -o lmdb/midl.o
lmdb/mdb.c:935:11: warning: defining a type within '__builtin_offsetof' is a Clang extension [-Wgnu-offsetof-extensions]
  935 |         + 270 * (MDB_LOCK_TYPE % 120)
      |                  ^~~~~~~~~~~~~
lmdb/mdb.c:913:12: note: expanded from macro 'MDB_LOCK_TYPE'
  913 |                 LOG2_MOD(ALIGNOF2(pthread_mutex_t), 5) + \
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~
lmdb/mdb.c:711:19: note: expanded from macro 'ALIGNOF2'
  711 |         LOW_BIT(offsetof(struct { char ch_; type align_; }, align_))
      |                          ^~~~~~
/usr/local/clang18/lib/clang/18/include/__stddef_offsetof.h:16:43: note: expanded from macro 'offsetof'
   16 | #define offsetof(t, d) __builtin_offsetof(t, d)
      |                                           ^
lmdb/mdb.c:701:23: note: expanded from macro 'LOW_BIT'
  701 | #define LOW_BIT(n)              ((n) & (-(n)))
      |                                   ^
lmdb/mdb.c:704:37: note: expanded from macro 'LOG2_MOD'
  704 | #define LOG2_MOD(p2, n) (7 - 86 / ((p2) % ((1U<<(n))-1) + 11))
      |                                     ^~
lmdb/mdb.c:935:11: warning: defining a type within '__builtin_offsetof' is a Clang extension [-Wgnu-offsetof-extensions]
  935 |         + 270 * (MDB_LOCK_TYPE % 120)
      |                  ^~~~~~~~~~~~~
lmdb/mdb.c:913:12: note: expanded from macro 'MDB_LOCK_TYPE'
  913 |                 LOG2_MOD(ALIGNOF2(pthread_mutex_t), 5) + \
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~
lmdb/mdb.c:711:19: note: expanded from macro 'ALIGNOF2'
  711 |         LOW_BIT(offsetof(struct { char ch_; type align_; }, align_))
      |                          ^~~~~~
/usr/local/clang18/lib/clang/18/include/__stddef_offsetof.h:16:43: note: expanded from macro 'offsetof'
   16 | #define offsetof(t, d) __builtin_offsetof(t, d)
      |                                           ^
lmdb/mdb.c:701:31: note: expanded from macro 'LOW_BIT'
  701 | #define LOW_BIT(n)              ((n) & (-(n)))
      |                                           ^
lmdb/mdb.c:704:37: note: expanded from macro 'LOG2_MOD'
  704 | #define LOG2_MOD(p2, n) (7 - 86 / ((p2) % ((1U<<(n))-1) + 11))
      |                                     ^~
lmdb/mdb.c:2383:6: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
 2383 |         int rc, (*insert)(MDB_ID2L, MDB_ID2 *);
      |             ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -Ilmdb -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c registration.c -o registration.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -Ilmdb -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c thor.c -o thor.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include   -Ilmdb -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c util.c -o util.o
3 warnings generated.
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o thor.so lmdb/mdb.o lmdb/midl.o registration.o thor.o util.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/thor/src'
installing to /data/gannet/ripley/R/packages/tests-clang/thor.Rcheck/00LOCK-thor/00new/thor/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (thor)