* installing *source* package ‘subselect’ ...
** package ‘subselect’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using Fortran compiler: ‘flang-new version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/subselect/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c CCRcrt.cpp -o CCRcrt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c GCDcrt.cpp -o GCDcrt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Gstatma.cpp -o Gstatma.o
In file included from GCDcrt.cpp:5:
./VSQforms.h:28:16: warning: 'extendedleaps::vsqfdata::updatesum' hides overloaded virtual function [-Woverloaded-virtual]
28 | virtual real updatesum(direction dir,mindices& mmind,vind var,vind dim,partialvsqfdata *pdt,bool& reliable,const double tol) const;
| ^
./Qforms.h:79:16: note: hidden overloaded virtual function 'extendedleaps::sqfdata::updatesum' declared here: different number of parameters (5 vs 7)
79 | virtual real updatesum(mindices& mmind,vind var,partialsqfdata* pdt,bool& reliable,const double tol) const;
| ^
In file included from GCDcrt.cpp:5:
./VSQforms.h:29:16: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
29 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,vind dim,partialvsqfdata* pdt,vsqfdata* fdt,bool last,
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
In file included from GCDcrt.cpp:5:
./VSQforms.h:32:8: warning: 'extendedleaps::vsqfdata::updatesum' hides overloaded virtual function [-Woverloaded-virtual]
32 | real updatesum(direction dir,vind varind,vind dim,partialvsqfdata* newdata,bool& reliable,const double tol) const;
| ^
./Qforms.h:79:16: note: hidden overloaded virtual function 'extendedleaps::sqfdata::updatesum' declared here: different number of parameters (5 vs 6)
79 | virtual real updatesum(mindices& mmind,vind var,partialsqfdata* pdt,bool& reliable,const double tol) const;
| ^
In file included from GCDcrt.cpp:5:
./VSQforms.h:33:8: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
33 | void pivot(direction dir,lagindex<d>& prtmmit,vind vp,vind t,vind dim,partialvsqfdata* newpdata,vsqfdata* newfdata,bool last,
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
In file included from GCDcrt.cpp:5:
./VSQforms.h:35:8: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
35 | void pivot(direction dir,lagindex<i>& prtmmit,vind vp,vind t,vind dim,partialvsqfdata* newpdata,vsqfdata* newfdata
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
5 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c MStcrt.cpp -o MStcrt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c NewtonRp.cpp -o NewtonRp.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Qforms.cpp -o Qforms.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RMcrt.cpp -o RMcrt.o
In file included from RMcrt.cpp:4:
./RMcrt.h:17:8: warning: private field 'p' is not used [-Wunused-private-field]
17 | vind p;
| ^
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RVcrt.cpp -o RVcrt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Rnk3CCRcrt.cpp -o Rnk3CCRcrt.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c SRI_sscma.cpp -o SRI_sscma.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c SR_datatrnsf.cpp -o SR_datatrnsf.o
In file included from SR_datatrnsf.cpp:10:
./VSQforms.h:28:16: warning: 'extendedleaps::vsqfdata::updatesum' hides overloaded virtual function [-Woverloaded-virtual]
28 | virtual real updatesum(direction dir,mindices& mmind,vind var,vind dim,partialvsqfdata *pdt,bool& reliable,const double tol) const;
| ^
./Qforms.h:79:16: note: hidden overloaded virtual function 'extendedleaps::sqfdata::updatesum' declared here: different number of parameters (5 vs 7)
79 | virtual real updatesum(mindices& mmind,vind var,partialsqfdata* pdt,bool& reliable,const double tol) const;
| ^
In file included from SR_datatrnsf.cpp:10:
./VSQforms.h:29:16: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
29 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,vind dim,partialvsqfdata* pdt,vsqfdata* fdt,bool last,
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
In file included from SR_datatrnsf.cpp:10:
./VSQforms.h:32:8: warning: 'extendedleaps::vsqfdata::updatesum' hides overloaded virtual function [-Woverloaded-virtual]
32 | real updatesum(direction dir,vind varind,vind dim,partialvsqfdata* newdata,bool& reliable,const double tol) const;
| ^
./Qforms.h:79:16: note: hidden overloaded virtual function 'extendedleaps::sqfdata::updatesum' declared here: different number of parameters (5 vs 6)
79 | virtual real updatesum(mindices& mmind,vind var,partialsqfdata* pdt,bool& reliable,const double tol) const;
| ^
In file included from SR_datatrnsf.cpp:10:
./VSQforms.h:33:8: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
33 | void pivot(direction dir,lagindex<d>& prtmmit,vind vp,vind t,vind dim,partialvsqfdata* newpdata,vsqfdata* newfdata,bool last,
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
In file included from SR_datatrnsf.cpp:10:
./VSQforms.h:35:8: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
35 | void pivot(direction dir,lagindex<i>& prtmmit,vind vp,vind t,vind dim,partialvsqfdata* newpdata,vsqfdata* newfdata
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c SR_intf.cpp -o SR_intf.o
In file included from SR_datatrnsf.cpp:12:
./RMcrt.h:17:8: warning: private field 'p' is not used [-Wunused-private-field]
17 | vind p;
| ^
6 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c SpecialArrays.cpp -o SpecialArrays.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Sscma.cpp -o Sscma.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Subsets.cpp -o Subsets.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c VSQforms.cpp -o VSQforms.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Varsmbo.cpp -o Varsmbo.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Wrkf1.cpp -o Wrkf1.o
In file included from VSQforms.cpp:5:
./VSQforms.h:28:16: warning: 'extendedleaps::vsqfdata::updatesum' hides overloaded virtual function [-Woverloaded-virtual]
28 | virtual real updatesum(direction dir,mindices& mmind,vind var,vind dim,partialvsqfdata *pdt,bool& reliable,const double tol) const;
| ^
./Qforms.h:79:16: note: hidden overloaded virtual function 'extendedleaps::sqfdata::updatesum' declared here: different number of parameters (5 vs 7)
79 | virtual real updatesum(mindices& mmind,vind var,partialsqfdata* pdt,bool& reliable,const double tol) const;
| ^
In file included from VSQforms.cpp:5:
./VSQforms.h:29:16: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
29 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,vind dim,partialvsqfdata* pdt,vsqfdata* fdt,bool last,
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
In file included from VSQforms.cpp:5:
./VSQforms.h:32:8: warning: 'extendedleaps::vsqfdata::updatesum' hides overloaded virtual function [-Woverloaded-virtual]
32 | real updatesum(direction dir,vind varind,vind dim,partialvsqfdata* newdata,bool& reliable,const double tol) const;
| ^
./Qforms.h:79:16: note: hidden overloaded virtual function 'extendedleaps::sqfdata::updatesum' declared here: different number of parameters (5 vs 6)
79 | virtual real updatesum(mindices& mmind,vind var,partialsqfdata* pdt,bool& reliable,const double tol) const;
| ^
In file included from VSQforms.cpp:5:
./VSQforms.h:33:8: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
33 | void pivot(direction dir,lagindex<d>& prtmmit,vind vp,vind t,vind dim,partialvsqfdata* newpdata,vsqfdata* newfdata,bool last,
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
In file included from VSQforms.cpp:5:
./VSQforms.h:35:8: warning: 'extendedleaps::vsqfdata::pivot' hides overloaded virtual function [-Woverloaded-virtual]
35 | void pivot(direction dir,lagindex<i>& prtmmit,vind vp,vind t,vind dim,partialvsqfdata* newpdata,vsqfdata* newfdata
| ^
./Qforms.h:50:16: note: hidden overloaded virtual function 'extendedleaps::qfdata::pivot' declared here: different number of parameters (9 vs 10)
50 | virtual void pivot(direction dir,mindices& mmind,vind vp,vind t,partialqfdata* pdt,qfdata* fdt,
| ^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c anneal.f -o anneal.o
5 warnings generated.
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c auxiliar.f -o auxiliar.o
Wrkf1.cpp:257:4: warning: add explicit braces to avoid dangling else [-Wdangling-else]
257 | else if (minnvfrd < maxdim) pivot(SW,SRC,frwind0,t,nv,u,t,minnvfrd,lvind,false);
| ^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c genetic.f -o genetic.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c improve.f -o improve.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c wrap.c -o wrap.o
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o subselect.so CCRcrt.o GCDcrt.o Gstatma.o MStcrt.o NewtonRp.o Qforms.o RMcrt.o RVcrt.o Rnk3CCRcrt.o SRI_sscma.o SR_datatrnsf.o SR_intf.o SpecialArrays.o Sscma.o Subsets.o VSQforms.o Varsmbo.o Wrkf1.o anneal.o auxiliar.o genetic.o improve.o init.o wrap.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/subselect/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/subselect/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/subselect/src'
installing to /data/gannet/ripley/R/packages/tests-clang/subselect.Rcheck/00LOCK-subselect/00new/subselect/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (subselect)