* installing *source* package ‘sspse’ ... ** package ‘sspse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmp.c -o cmp.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dis.c -o dis.o dis.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ dis.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ dis.c:30:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ dis.c:30:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dpoilog.c -o dpoilog.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c getinclC.c -o getinclC.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c getinclCstacked.c -o getinclCstacked.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c likelihoodcmp.c -o likelihoodcmp.o likelihoodcmp.c:33:10: warning: variable 'dkappa' set but not used [-Wunused-but-set-variable] 33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; | ^ likelihoodcmp.c:33:18: warning: variable 'ddf' set but not used [-Wunused-but-set-variable] 33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; | ^ likelihoodcmp.c:33:36: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; | ^ likelihoodcmp.c:33:49: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; | ^ likelihoodcmp.c:271:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] 271 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; | ^ likelihoodcmp.c:277:18: warning: variable 'rkappa' set but not used [-Wunused-but-set-variable] 277 | double dkappa, rkappa, ddf, dmu; | ^ likelihoodcmp.c:277:26: warning: variable 'ddf' set but not used [-Wunused-but-set-variable] 277 | double dkappa, rkappa, ddf, dmu; | ^ likelihoodcmp.c:277:31: warning: variable 'dmu' set but not used [-Wunused-but-set-variable] 277 | double dkappa, rkappa, ddf, dmu; | ^ likelihoodcmp.c:278:18: warning: variable 'dsigma2' set but not used [-Wunused-but-set-variable] 278 | double dsigma, dsigma2, dmuproposal, dsigmaproposal; | ^ 9 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mcmc.c -o mcmc.o mcmc.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:30:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:30:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:234:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] 234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:234:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] 234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:234:25: warning: variable 'dmu0' set but not used [-Wunused-but-set-variable] 234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:234:31: warning: variable 'dsigma0' set but not used [-Wunused-but-set-variable] 234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:234:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:234:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ mcmc.c:342:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] 342 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; | ^ mcmc.c:348:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable] 348 | double dkappa0, rkappa0, ddf0, dmu0, logK; | ^ 12 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmp.c -o posteriorcmp.o posteriorcmp.c:280:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] 280 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnintheta; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmp2.c -o posteriorcmp2.o posteriorcmp2.c:38:10: warning: variable 'ddfmu' set but not used [-Wunused-but-set-variable] 38 | double ddfmu, ddfsigma, dnuproposal; | ^ posteriorcmp2.c:38:17: warning: variable 'ddfsigma' set but not used [-Wunused-but-set-variable] 38 | double ddfmu, ddfsigma, dnuproposal; | ^ posteriorcmp2.c:38:27: warning: variable 'dnuproposal' set but not used [-Wunused-but-set-variable] 38 | double ddfmu, ddfsigma, dnuproposal; | ^ 3 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpdisease.c -o posteriorcmpdisease.o posteriorcmpdisease.c:33:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] 33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ posteriorcmpdisease.c:33:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] 33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ posteriorcmpdisease.c:33:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ posteriorcmpdisease.c:33:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpvis.c -o posteriorcmpvis.o posteriorcmpvis.c:526:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] 526 | double dmemnu, dmemnur; | ^ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpvis2.c -o posteriorcmpvis2.o posteriorcmpvis2.c:61:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable] 61 | double temp, temp2, uprob1, uprob2; | ^ posteriorcmpvis2.c:62:10: warning: unused variable 'rtprob' [-Wunused-variable] 62 | double rtprob, lliki; | ^~~~~~ posteriorcmpvis2.c:625:16: warning: unused variable 'rtprob' [-Wunused-variable] 625 | double temp, rtprob; | ^~~~~~ posteriorcmpvis2.c:636:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] 636 | double dmemnu, dmemnur; | ^ 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpwpvis.c -o posteriorcmpwpvis.o posteriorcmpwpvis.c:58:10: warning: unused variable 'rtprob' [-Wunused-variable] 58 | double rtprob, lliki; | ^~~~~~ posteriorcmpwpvis.c:482:16: warning: unused variable 'rtprob' [-Wunused-variable] 482 | double temp, rtprob; | ^~~~~~ posteriorcmpwpvis.c:495:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] 495 | double dmemnu, dmemnur; | ^ 3 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpwpvis2.c -o posteriorcmpwpvis2.o posteriorcmpwpvis2.c:64:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable] 64 | double temp, temp2, uprob1, uprob2; | ^ posteriorcmpwpvis2.c:650:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] 650 | double dmemnu, dmemnur; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpwpvis_binomial.c -o posteriorcmpwpvis_binomial.o posteriorcmpwpvis_binomial.c:486:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] 486 | double dmemnu, dmemnur; | ^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriornbinom.c -o posteriornbinom.o posteriornbinom.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriornbinom.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriornbinom.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriornbinom.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriornbinom.c:239:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] 239 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; | ^ posteriornbinom.c:245:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable] 245 | double dkappa0, rkappa0, ddf0, dmu0, logK; | ^ 1 warning generated. 6 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorpln.c -o posteriorpln.o posteriorpln.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriorpln.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriorpln.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriorpln.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; | ^ posteriorpln.c:248:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] 248 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; | ^ 5 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorplndisease.c -o posteriorplndisease.o posteriorplndisease.c:32:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] 32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ posteriorplndisease.c:32:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] 32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ posteriorplndisease.c:32:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] 32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ posteriorplndisease.c:32:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] 32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; | ^ 4 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ppspolya.c -o ppspolya.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c size.c -o size.o size.c:102:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable] 102 | double Nd, lcardN, Kd, Md, lM; | ^ size.c:102:32: warning: variable 'lM' set but not used [-Wunused-but-set-variable] 102 | double Nd, lcardN, Kd, Md, lM; | ^ size.c:226:12: warning: variable 'mhtn' set but not used [-Wunused-but-set-variable] 226 | double mhtn; | ^ size.c:228:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable] 228 | double Nd, Kd, Md, lM; | ^ size.c:228:16: warning: variable 'Kd' set but not used [-Wunused-but-set-variable] 228 | double Nd, Kd, Md, lM; | ^ size.c:228:24: warning: variable 'lM' set but not used [-Wunused-but-set-variable] 228 | double Nd, Kd, Md, lM; | ^ 6 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c size.older.c -o size.older.o size.older.c:155:16: warning: variable 'lM' set but not used [-Wunused-but-set-variable] 155 | double Md, lM; | ^ size.older.c:222:20: warning: variable 'lM' set but not used [-Wunused-but-set-variable] 222 | double Nc, Md, lM; | ^ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c sizeall.c -o sizeall.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c sspse_init.c -o sspse_init.o /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o sspse.so cmp.o dis.o dpoilog.o getinclC.o getinclCstacked.o likelihoodcmp.o mcmc.o posteriorcmp.o posteriorcmp2.o posteriorcmpdisease.o posteriorcmpvis.o posteriorcmpvis2.o posteriorcmpwpvis.o posteriorcmpwpvis2.o posteriorcmpwpvis_binomial.o posteriornbinom.o posteriorpln.o posteriorplndisease.o ppspolya.o size.o size.older.o sizeall.o sspse_init.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src' installing to /data/gannet/ripley/R/packages/tests-clang/sspse.Rcheck/00LOCK-sspse/00new/sspse/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sspse)