* installing *source* package ‘sspse’ ...
** package ‘sspse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c cmp.c -o cmp.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dis.c -o dis.o
dis.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
dis.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
dis.c:30:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
dis.c:30:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
4 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dpoilog.c -o dpoilog.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c getinclC.c -o getinclC.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c getinclCstacked.c -o getinclCstacked.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c likelihoodcmp.c -o likelihoodcmp.o
likelihoodcmp.c:33:10: warning: variable 'dkappa' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^
likelihoodcmp.c:33:18: warning: variable 'ddf' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^
likelihoodcmp.c:33:36: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^
likelihoodcmp.c:33:49: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal;
| ^
likelihoodcmp.c:271:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
271 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^
likelihoodcmp.c:277:18: warning: variable 'rkappa' set but not used [-Wunused-but-set-variable]
277 | double dkappa, rkappa, ddf, dmu;
| ^
likelihoodcmp.c:277:26: warning: variable 'ddf' set but not used [-Wunused-but-set-variable]
277 | double dkappa, rkappa, ddf, dmu;
| ^
likelihoodcmp.c:277:31: warning: variable 'dmu' set but not used [-Wunused-but-set-variable]
277 | double dkappa, rkappa, ddf, dmu;
| ^
likelihoodcmp.c:278:18: warning: variable 'dsigma2' set but not used [-Wunused-but-set-variable]
278 | double dsigma, dsigma2, dmuproposal, dsigmaproposal;
| ^
9 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mcmc.c -o mcmc.o
mcmc.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:30:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:30:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
30 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:234:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:234:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:234:25: warning: variable 'dmu0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:234:31: warning: variable 'dsigma0' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:234:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:234:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
234 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
mcmc.c:342:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
342 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^
mcmc.c:348:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable]
348 | double dkappa0, rkappa0, ddf0, dmu0, logK;
| ^
12 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmp.c -o posteriorcmp.o
posteriorcmp.c:280:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
280 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnintheta;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmp2.c -o posteriorcmp2.o
posteriorcmp2.c:38:10: warning: variable 'ddfmu' set but not used [-Wunused-but-set-variable]
38 | double ddfmu, ddfsigma, dnuproposal;
| ^
posteriorcmp2.c:38:17: warning: variable 'ddfsigma' set but not used [-Wunused-but-set-variable]
38 | double ddfmu, ddfsigma, dnuproposal;
| ^
posteriorcmp2.c:38:27: warning: variable 'dnuproposal' set but not used [-Wunused-but-set-variable]
38 | double ddfmu, ddfsigma, dnuproposal;
| ^
3 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpdisease.c -o posteriorcmpdisease.o
posteriorcmpdisease.c:33:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
posteriorcmpdisease.c:33:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
posteriorcmpdisease.c:33:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
posteriorcmpdisease.c:33:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
33 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
4 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpvis.c -o posteriorcmpvis.o
posteriorcmpvis.c:526:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
526 | double dmemnu, dmemnur;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpvis2.c -o posteriorcmpvis2.o
posteriorcmpvis2.c:61:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable]
61 | double temp, temp2, uprob1, uprob2;
| ^
posteriorcmpvis2.c:62:10: warning: unused variable 'rtprob' [-Wunused-variable]
62 | double rtprob, lliki;
| ^~~~~~
posteriorcmpvis2.c:625:16: warning: unused variable 'rtprob' [-Wunused-variable]
625 | double temp, rtprob;
| ^~~~~~
posteriorcmpvis2.c:636:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
636 | double dmemnu, dmemnur;
| ^
4 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpwpvis.c -o posteriorcmpwpvis.o
posteriorcmpwpvis.c:58:10: warning: unused variable 'rtprob' [-Wunused-variable]
58 | double rtprob, lliki;
| ^~~~~~
posteriorcmpwpvis.c:482:16: warning: unused variable 'rtprob' [-Wunused-variable]
482 | double temp, rtprob;
| ^~~~~~
posteriorcmpwpvis.c:495:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
495 | double dmemnu, dmemnur;
| ^
3 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpwpvis2.c -o posteriorcmpwpvis2.o
posteriorcmpwpvis2.c:64:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable]
64 | double temp, temp2, uprob1, uprob2;
| ^
posteriorcmpwpvis2.c:650:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
650 | double dmemnu, dmemnur;
| ^
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorcmpwpvis_binomial.c -o posteriorcmpwpvis_binomial.o
posteriorcmpwpvis_binomial.c:486:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable]
486 | double dmemnu, dmemnur;
| ^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriornbinom.c -o posteriornbinom.o
posteriornbinom.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriornbinom.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriornbinom.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriornbinom.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriornbinom.c:239:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
239 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^
posteriornbinom.c:245:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable]
245 | double dkappa0, rkappa0, ddf0, dmu0, logK;
| ^
1 warning generated.
6 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorpln.c -o posteriorpln.o
posteriorpln.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriorpln.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriorpln.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriorpln.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
31 | double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal;
| ^
posteriorpln.c:248:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable]
248 | int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin;
| ^
5 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c posteriorplndisease.c -o posteriorplndisease.o
posteriorplndisease.c:32:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
posteriorplndisease.c:32:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
posteriorplndisease.c:32:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
posteriorplndisease.c:32:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable]
32 | double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal;
| ^
4 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ppspolya.c -o ppspolya.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c size.c -o size.o
size.c:102:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable]
102 | double Nd, lcardN, Kd, Md, lM;
| ^
size.c:102:32: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
102 | double Nd, lcardN, Kd, Md, lM;
| ^
size.c:226:12: warning: variable 'mhtn' set but not used [-Wunused-but-set-variable]
226 | double mhtn;
| ^
size.c:228:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable]
228 | double Nd, Kd, Md, lM;
| ^
size.c:228:16: warning: variable 'Kd' set but not used [-Wunused-but-set-variable]
228 | double Nd, Kd, Md, lM;
| ^
size.c:228:24: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
228 | double Nd, Kd, Md, lM;
| ^
6 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c size.older.c -o size.older.o
size.older.c:155:16: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
155 | double Md, lM;
| ^
size.older.c:222:20: warning: variable 'lM' set but not used [-Wunused-but-set-variable]
222 | double Nc, Md, lM;
| ^
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c sizeall.c -o sizeall.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c sspse_init.c -o sspse_init.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o sspse.so cmp.o dis.o dpoilog.o getinclC.o getinclCstacked.o likelihoodcmp.o mcmc.o posteriorcmp.o posteriorcmp2.o posteriorcmpdisease.o posteriorcmpvis.o posteriorcmpvis2.o posteriorcmpwpvis.o posteriorcmpwpvis2.o posteriorcmpwpvis_binomial.o posteriornbinom.o posteriorpln.o posteriorplndisease.o ppspolya.o size.o size.older.o sizeall.o sspse_init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/sspse/src'
installing to /data/gannet/ripley/R/packages/tests-clang/sspse.Rcheck/00LOCK-sspse/00new/sspse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sspse)