* installing *source* package ‘spam’ ...
** package ‘spam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using Fortran compiler: ‘flang-new version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c bckslvmodified.f -o bckslvmodified.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c cholmodified.f -o cholmodified.o
./cholmodified.f:377:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^
./cholmodified.f:942:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^^^^^^^^^^^
./cholmodified.f:1035:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^^^^^^^^^^^
./cholmodified.f:1125:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^^^^^^^^^^^
./cholmodified.f:1151:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^^^^^^^^^^^
./cholmodified.f:2748:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^
./cholmodified.f:3765:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^^^
./cholmodified.f:4301:2: warning: Compiler directive was ignored
CDIR$ IVDEP
^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c dgetv0.f -o dgetv0.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c dist.f -o dist.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c distCpp.cpp -o distCpp.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c dn_ARPACK.f -o dn_ARPACK.o
./dn_ARPACK.f:2951:11: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
& call dgemv ('N', n, kplusp, one, v, ldv, q(1,kev+1), 1, zero,
^
./dn_ARPACK.f:804:13: previous reference to 'dgemv'
call dgemv ('T', ncv, nconv, one, workl(invsub),
^
./dn_ARPACK.f:2960:10: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
call dgemv ('N', n, kplusp-i+1, one, v, ldv,
^
./dn_ARPACK.f:804:13: previous reference to 'dgemv'
call dgemv ('T', ncv, nconv, one, workl(invsub),
^
./dn_ARPACK.f:3733:7: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #5: incompatible dummy data object shapes
call dgemv('T', n, n, one, q, ldq, bounds(1), 1, zero,
^
./dn_ARPACK.f:804:13: previous reference to 'dgemv'
call dgemv ('T', ncv, nconv, one, workl(invsub),
^
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c dn_eigen.f -o dn_eigen.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c ds_ARPACK.f -o ds_ARPACK.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c ds_eigen.f -o ds_eigen.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c fromsparsekit.f -o fromsparsekit.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c gmult.f -o gmult.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c kronecker.f -o kronecker.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c permutation.f -o permutation.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c rowcolstats.f -o rowcolstats.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c spamown.f -o spamown.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c spamown2.f -o spamown2.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c xybind.f -o xybind.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o spam.so RcppExports.o bckslvmodified.o cholmodified.o dgetv0.o dist.o distCpp.o dn_ARPACK.o dn_eigen.o ds_ARPACK.o ds_eigen.o fromsparsekit.o gmult.o init.o kronecker.o permutation.o rowcolstats.o spamown.o spamown2.o xybind.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/spam/src'
installing to /data/gannet/ripley/R/packages/tests-clang/spam.Rcheck/00LOCK-spam/00new/spam/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘diag’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘norm’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘spam’
Creating a new generic function for ‘backsolve’ in package ‘spam’
Creating a new generic function for ‘forwardsolve’ in package ‘spam’
Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘spam’
(from the saved implicit definition)
Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘rbind’ from package ‘base’ in package ‘spam’
Creating a generic function for ‘cbind’ from package ‘base’ in package ‘spam’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spam)