* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/smoothROCtime.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘smoothROCtime/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘smoothROCtime’ version ‘0.1.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘smoothROCtime’ can be installed ... [10s/14s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/smoothROCtime-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s/19s] OK * checking Rd files ... NOTE checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup? 14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) smoothROCtime-package.Rd:12: Lost braces 12 | \item \code{\link{funcen}}: {Bivariate kernel density estimation of the joint density function of the \eqn{(marker, time-to-event)} variable.} | ^ checkRd: (-1) smoothROCtime-package.Rd:13: Lost braces; missing escapes or markup? 13 | \item \code{\link{stRoc}}: {Smooth estimations for Cumulative/Dynamic and Incident/Dynamic ROC curves.} | ^ checkRd: (-1) smoothROCtime-package.Rd:14: Lost braces; missing escapes or markup? 14 | \item \code{\link{plot.sROCt}}: {Plots of Cumulative/Dynamic and Incident/Dyanmic ROC curve estimations.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup? 17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.} | ^ checkRd: (-1) stRoc.Rd:69: Lost braces; missing escapes or markup? 69 | \item {\code{time}} - {single point of time at which the estimation each the C/D ROC curve has been computed.} | ^ checkRd: (-1) stRoc.Rd:70: Lost braces; missing escapes or markup? 70 | \item {\code{obvt}} - {observed times for the individuals in the sample.} | ^ checkRd: (-1) stRoc.Rd:71: Lost braces; missing escapes or markup? 71 | \item {\code{p}} - {estimations of the probabilities computed and allocated to each subject.} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking examples ... [21s/26s] OK * checking PDF version of manual ... [7s/11s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs