* installing *source* package ‘rxode2ll’ ...
** this is package ‘rxode2ll’ version ‘2.0.18’
** package ‘rxode2ll’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/data/localhost/ripley/R/test-clang/BH/include
RCPP=/data/localhost/ripley/R/test-clang/Rcpp/include
EG=/data/localhost/ripley/R/test-clang/RcppEigen/include
SH=-I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src'
CXX_STD = CXX17
################################################################################
## Package library flags.
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS)
# Release options
PKG_CFLAGS = -D_isrxode2parse_
# -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP keeps stan-math's TBB
# ad_tape_observer out of the build, so nothing links or loads TBB (loading it
# is what CRAN's gcc-UBSAN check reports); rx_stan_math_thread_init_rev_autodiff()
# in llik2.h creates each thread's AD tape before every jacobian(). The
# reduce_sum/map_rect guards keep out TBB's partitioner.h, whose non-inline
# static functions call libtbb and survive -O0 builds (covr, load_all()).
RXLL_NO_TBB = -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -DSTAN_THREADS $(RXLL_NO_TBB) -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"$(BH)" -I"$(EG)" $(SH) -I"$(RCPP)"
--------[end src/Makevars]--------
** libs
specified C++17
using C compiler: ‘clang version 23.1.1’
using C++ compiler: ‘clang version 23.1.1’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/rxode2ll/src'
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from RcppExports.cpp:4:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
5 warnings generated.
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -D_isrxode2parse_ -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikBeta.cpp -o llikBeta.o
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikBeta.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikBetaProportion.cpp -o llikBetaProportion.o
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikBetaProportion.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikBinom.cpp -o llikBinom.o
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikBinom.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikCauchy.cpp -o llikCauchy.o
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikCauchy.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikChisq.cpp -o llikChisq.o
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikChisq.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikDblExp.cpp -o llikDblExp.o
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikDblExp.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikExp.cpp -o llikExp.o
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikExp.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikExp.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikExp.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikF.cpp -o llikF.o
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikF.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikF.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikF.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikFrechet.cpp -o llikFrechet.o
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikFrechet.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikGamma.cpp -o llikGamma.o
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikGamma.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikGeom.cpp -o llikGeom.o
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikGeom.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikGumbel.cpp -o llikGumbel.o
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikGumbel.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikInvChisq.cpp -o llikInvChisq.o
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikInvChisq.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikInvGamma.cpp -o llikInvGamma.o
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikInvGamma.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikLnorm.cpp -o llikLnorm.o
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikLnorm.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikLogis.cpp -o llikLogis.o
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikLogis.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikNbinom.cpp -o llikNbinom.o
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikNbinom.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikNbinom2.cpp -o llikNbinom2.o
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikNbinom2.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikNorm.cpp -o llikNorm.o
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikNorm.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikPareto.cpp -o llikPareto.o
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikPareto.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikParetoType2.cpp -o llikParetoType2.o
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikParetoType2.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikPois.cpp -o llikPois.o
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikPois.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikPois.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikPois.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikRayleigh.cpp -o llikRayleigh.o
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikRayleigh.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikScaledInvChisq.cpp -o llikScaledInvChisq.o
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikScaledInvChisq.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikT.cpp -o llikT.o
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikT.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikT.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikT.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikUnif.cpp -o llikUnif.o
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikUnif.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang++ -std=gnu++17 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -fopenmp -DSTAN_THREADS -DSTAN_MATH_REV_CORE_INIT_CHAINABLESTACK_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_PRIM_FUNCTOR_REDUCE_SUM_STATIC_HPP -DSTAN_MATH_REV_FUNCTOR_REDUCE_SUM_HPP -DSTAN_MATH_REV_FUNCTOR_MAP_RECT_CONCURRENT_HPP -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -I"/data/localhost/ripley/R/test-clang/BH/include" -I"/data/localhost/ripley/R/test-clang/RcppEigen/include" -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/data/localhost/ripley/R/test-clang/StanHeaders/include/src' -I"/data/localhost/ripley/R/test-clang/Rcpp/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -D_LIBCPP_KEEP_TRANSITIVE_INCLUDES_LLVM23 -c llikWeibull.cpp -o llikWeibull.o
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/localhost/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:69: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:110: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/Eigen_NumTraits.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast.hpp:33:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/try_lexical_convert.hpp:31:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/lexical_cast/detail/converter_lexical.hpp:47:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/container/container_fwd.hpp:65:
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:29:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute]
29 | BOOST_MOVE_STD_NS_BEG
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG'
21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD'
74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD'
70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std {
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS'
51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \
| ^
<scratch space>:75:136: note: expanded from here
75 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230101"))), apply_to = function)
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/container/detail/std_fwd.hpp:61:1: note: '#pragma clang attribute push' regions ends here
61 | BOOST_MOVE_STD_NS_END
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END'
22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD'
75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD'
72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS
| ^
/usr/local/clang23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS'
57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop")
| ^
<scratch space>:77:8: note: expanded from here
77 | clang attribute _LibcxxExplicitABIAnnotations.pop
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:34:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/dimension.hpp:21:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/dimension_list.hpp:131:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/linear_algebra.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/unscale.hpp:28:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:20:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:29:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/conversion.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/units/detail/conversion_impl.hpp:21:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:11:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/constraint/cholesky_corr_constrain.hpp:4:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core.hpp:32:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/core/operator_division.hpp:15:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/fun/to_arena.hpp:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor.hpp:17:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint.hpp:25:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /data/localhost/ripley/R/test-clang/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/data/localhost/ripley/R/test-clang/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
| ^
/data/localhost/ripley/R/test-clang/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
28 | <boost/typeof/incr_registration_group.hpp>
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob.hpp:7:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
| ^~~~~~~~~~
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
| ^~~~~~~~~~~~~~~~~
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:7:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math.hpp:19:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob.hpp:290:
/data/localhost/ripley/R/test-clang/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
74 | static constexpr const char* function = "student_t_qf";
| ^~~~~~~~
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
72 | Index replacements = 0;
| ^
In file included from llikWeibull.cpp:1:
In file included from ./llik2.h:28:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37:
In file included from /data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/data/localhost/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | int count = 0;
| ^
19 warnings generated.
/usr/local/clang23/bin/clang-23 -std=gnu23 -I"/data/localhost/ripley/R/R-clang/include" -DNDEBUG -I'/data/localhost/ripley/R/test-clang/Rcpp/include' -I'/data/localhost/ripley/R/test-clang/RcppEigen/include' -I'/data/localhost/ripley/R/test-clang/StanHeaders/include' -I'/data/localhost/ripley/R/test-clang/BH/include' -I'/data/localhost/ripley/R/test-clang/RcppParallel/include' -isystem /usr/local/clang23/include -I/usr/local/clang/include -D_isrxode2parse_ -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ptr.c -o ptr.o
/usr/local/clang23/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang23/lib -L/usr/local/clang23/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -o rxode2ll.so RcppExports.o init.o llikBeta.o llikBetaProportion.o llikBinom.o llikCauchy.o llikChisq.o llikDblExp.o llikExp.o llikF.o llikFrechet.o llikGamma.o llikGeom.o llikGumbel.o llikInvChisq.o llikInvGamma.o llikLnorm.o llikLogis.o llikNbinom.o llikNbinom2.o llikNorm.o llikPareto.o llikParetoType2.o llikPois.o llikRayleigh.o llikScaledInvChisq.o llikT.o llikUnif.o llikWeibull.o ptr.o -L/data/localhost/ripley/R/R-clang/lib -lRlapack -L/data/localhost/ripley/R/R-clang/lib -lRblas -lflang_rt.runtime -lm -fopenmp
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/rxode2ll/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-clang/rxode2ll/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-clang/rxode2ll/src'
installing to /data/localhost/ripley/R/packages/tests-clang/rxode2ll.Rcheck/00LOCK-rxode2ll/00new/rxode2ll/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2ll)