* installing *source* package ‘runjags’ ...
** package ‘runjags’ successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
configure: Setting compile and link flags according to pkg-config
configure: Compile flags are -I/usr/local/clang/include/JAGS 
configure: Link flags are -L/usr/local/clang/lib64 -ljags 
checking for gcc... /usr/local/clang18/bin/clang
checking whether we are using the GNU C compiler... no
checking whether /usr/local/clang18/bin/clang accepts -g... no
checking for /usr/local/clang18/bin/clang option to accept ISO C89... unsupported
checking for jags_version in -ljags... yes
checking version of JAGS library... configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/runjags/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/DFunction.cc -o distributions/jags/DFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/DPQFunction.cc -o distributions/jags/DPQFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/PFunction.cc -o distributions/jags/PFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/QFunction.cc -o distributions/jags/QFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/RScalarDist.cc -o distributions/jags/RScalarDist.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DPar1.cc -o distributions/DPar1.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DPar2.cc -o distributions/DPar2.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DPar3.cc -o distributions/DPar3.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DPar4.cc -o distributions/DPar4.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DLomax.cc -o distributions/DLomax.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DMouchel.cc -o distributions/DMouchel.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DGenPar.cc -o distributions/DGenPar.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DHalfCauchy.cc -o distributions/DHalfCauchy.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c runjags.cc -o runjags.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c testrunjags.cc -o testrunjags.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o runjags.so distributions/jags/DFunction.o distributions/jags/DPQFunction.o distributions/jags/PFunction.o distributions/jags/QFunction.o distributions/jags/RScalarDist.o distributions/DPar1.o distributions/DPar2.o distributions/DPar3.o distributions/DPar4.o distributions/DLomax.o distributions/DMouchel.o distributions/DGenPar.o distributions/DHalfCauchy.o init.o runjags.o testrunjags.o -L/usr/local/clang/lib64 -ljags
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/runjags/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/runjags/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/runjags/src'
installing to /data/gannet/ripley/R/packages/tests-clang/runjags.Rcheck/00LOCK-runjags/00new/runjags/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (runjags)