* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/robustlmm.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘robustlmm/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘robustlmm’ version ‘3.3-1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘robustlmm’ can be installed ... [112s/82s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/robustlmm-00install.html' for details. * used C compiler: ‘clang version 18.1.4’ * used C++ compiler: ‘clang version 18.1.4’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [52s/63s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [28s/33s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [134s/165s] OK Running ‘DAS-scale.R’ Running ‘DASvar-fallback.R’ Running ‘PsiFunction.R’ [11s/13s] Running ‘asymptoticEfficiency.R’ Running ‘compare-methods.R’ [17s/19s] Comparing ‘compare-methods.Rout’ to ‘compare-methods.Rout.save’ ... OK Running ‘expectations.R’ Running ‘fitDatasets.R’ [44s/56s] Running ‘genericFunctions.R’ Running ‘getME.R’ Comparing ‘getME.Rout’ to ‘getME.Rout.save’ ... OK Running ‘multipleGroupingFactorsTestData.R’ Running ‘offset.R’ Running ‘psi-rho-funs.R’ Running ‘rlmerMod.R’ Running ‘simulationStudies.R’ Running ‘subset.R’ Running ‘tau.R’ Running ‘testMatrices.R’ Running ‘weights.R’ [12s/14s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [105s/131s] OK * checking PDF version of manual ... [10s/15s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: OK