* installing *source* package ‘robCompositions’ ... ** package ‘robCompositions’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c bspline.cpp -o bspline.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c classData.cpp -o classData.o In file included from classData.cpp:10: In file included from ./density_estimation.h:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from classData.cpp:10: In file included from ./density_estimation.h:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c cuore.cpp -o cuore.o In file included from cuore.cpp:1: In file included from ./density_estimation.h:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from cuore.cpp:1: In file included from ./density_estimation.h:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from cuore.cpp:10: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from cuore.cpp:10: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c density_estimation.cpp -o density_estimation.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gauss_points_weights.cpp -o gauss_points_weights.o In file included from density_estimation.cpp:2: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from density_estimation.cpp:2: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ cuore.cpp:235:7: warning: unused variable 'barWidth' [-Wunused-variable] 235 | int barWidth = 70; // for bar progress plot | ^~~~~~~~ cuore.cpp:236:7: warning: unused variable 'count' [-Wunused-variable] 236 | int count = 0; | ^~~~~ cuore.cpp:237:7: warning: unused variable 'pos' [-Wunused-variable] 237 | int pos = 0; | ^~~ 8 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c robCompositions.c -o robCompositions.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c robCompositions_init.c -o robCompositions_init.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c sandia_rules.cpp -o sandia_rules.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/data/gannet/ripley/R/R-clang/library/Rcpp/include -I/data/gannet/ripley/R/R-clang/library/RcppEigen/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c zeros.cpp -o zeros.o sandia_rules.cpp:6030:17: warning: unused variable 'sqrtpi' [-Wunused-variable] 6030 | static double sqrtpi = 1.7724538509055159; | ^~~~~~ sandia_rules.cpp:7009:7: warning: unused variable 'j' [-Wunused-variable] 7009 | int j; | ^ sandia_rules.cpp:11501:10: warning: variable 'cc' set but not used [-Wunused-but-set-variable] 11501 | double cc; | ^ sandia_rules.cpp:13834:10: warning: variable 'fx' set but not used [-Wunused-but-set-variable] 13834 | double fx; | ^ sandia_rules.cpp:16460:7: warning: unused variable 'i' [-Wunused-variable] 16460 | int i; | ^ sandia_rules.cpp:16556:7: warning: unused variable 'i' [-Wunused-variable] 16556 | int i; | ^ sandia_rules.cpp:19283:7: warning: unused variable 'j' [-Wunused-variable] 19283 | int j; | ^ sandia_rules.cpp:19444:7: warning: unused variable 'j' [-Wunused-variable] 19444 | int j; | ^ sandia_rules.cpp:19449:7: warning: unused variable 'k1' [-Wunused-variable] 19449 | int k1; | ^~ sandia_rules.cpp:19812:7: warning: unused variable 'j' [-Wunused-variable] 19812 | int j; | ^ sandia_rules.cpp:19998:7: warning: unused variable 'j' [-Wunused-variable] 19998 | int j; | ^ sandia_rules.cpp:20003:7: warning: unused variable 'k1' [-Wunused-variable] 20003 | int k1; | ^~ sandia_rules.cpp:21619:17: warning: variable 'k' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 21619 | else if ( m < 0 ) | ^~~~~ sandia_rules.cpp:21747:14: note: uninitialized use occurs here 21747 | if ( 120 < k ) | ^ sandia_rules.cpp:21619:12: note: remove the 'if' if its condition is always true 21619 | else if ( m < 0 ) | ^~~~~~~~~~~~ 21620 | { sandia_rules.cpp:21385:8: note: initialize the variable 'k' to silence this warning 21385 | int k; | ^ | = 0 sandia_rules.cpp:25625:10: warning: variable 'len' set but not used [-Wunused-but-set-variable] 25625 | size_t len; | ^ zeros.cpp:110:10: warning: variable 't_tot' set but not used [-Wunused-but-set-variable] 110 | double t_tot = 0.0; | ^ 1 warning generated. 14 warnings generated. 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o robCompositions.so bspline.o classData.o cuore.o density_estimation.o gauss_points_weights.o robCompositions.o robCompositions_init.o sandia_rules.o zeros.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/robCompositions/src' installing to /data/gannet/ripley/R/packages/tests-clang/robCompositions.Rcheck/00LOCK-robCompositions/00new/robCompositions/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robCompositions)