* installing *source* package ‘rmatio’ ... ** package ‘rmatio’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking inttypes.h... yes checking stdlib.h... yes checking stdint.h... yes checking strings.h... yes checking string.h... yes checking sys/stat.h... yes checking sys/types.h... yes checking unistd.h... checking for zlib... yes checking size of char... 1 checking size of short... 2 checking size of double... 8 checking size of float... 4 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of size_t... 8 checking size of void *... 8 checking for mat_int8_t... int8_t checking for mat_int16_t... int16_t checking for mat_int32_t... int32_t checking for mat_int64_t... int64_t checking for mat_uint8_t... uint8_t checking for mat_uint16_t... uint16_t checking for mat_uint32_t... uint32_t checking for mat_uint64_t... uint64_t configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/matio/config.h config.status: src/matio/config.h is unchanged ** libs using C compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rmatio/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/endian.c -o matio/endian.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/inflate.c -o matio/inflate.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/mat4.c -o matio/mat4.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/mat5.c -o matio/mat5.o matio/mat5.c:3436:61: warning: variable 'nmemb' set but not used [-Wunused-but-set-variable] 3436 | int array_flags_size = 8, pad4 = 0, nBytes, i, nmemb = 1; | ^ matio/mat5.c:3519:20: warning: variable 'nmemb' set but not used [-Wunused-but-set-variable] 3519 | int nBytes, i, nmemb = 1; | ^ matio/mat5.c:3667:16: warning: variable 'bytesread' set but not used [-Wunused-but-set-variable] 3667 | size_t bytesread = fread(tag,4,1,(FILE*)mat->fp); | ^ matio/mat5.c:3811:12: warning: variable 'bytesread' set but not used [-Wunused-but-set-variable] 3811 | size_t bytesread = 0; | ^ matio/mat5.c:6599:12: warning: variable 'bytesread' set but not used [-Wunused-but-set-variable] 6599 | size_t bytesread = 0; | ^ matio/mat5.c:6872:12: warning: variable 'bytesread' set but not used [-Wunused-but-set-variable] 6872 | size_t bytesread = 0; | ^ matio/mat5.c:7308:16: warning: variable 'byteswritten' set but not used [-Wunused-but-set-variable] 7308 | size_t byteswritten = 0; | ^ matio/mat5.c:8110:20: warning: variable 'bytesread' set but not used [-Wunused-but-set-variable] 8110 | size_t bytesread = 0; | ^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/mat.c -o matio/mat.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/matvar_cell.c -o matio/matvar_cell.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/matvar_struct.c -o matio/matvar_struct.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c matio/read_data.c -o matio/read_data.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -isystem /usr/local/clang18/include -I/usr/local/clang/include -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rmatio.c -o rmatio.o 8 warnings generated. /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o rmatio.so matio/endian.o matio/inflate.o matio/mat4.o matio/mat5.o matio/mat.o matio/matvar_cell.o matio/matvar_struct.o matio/read_data.o rmatio.o -lz make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rmatio/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rmatio/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rmatio/src' installing to /data/gannet/ripley/R/packages/tests-clang/rmatio.Rcheck/00LOCK-rmatio/00new/rmatio/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmatio)