* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/rgeoda.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘rgeoda/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rgeoda’ version ‘0.0.10-4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rgeoda’ can be installed ... [9m/10m] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/rgeoda-00install.html' for details. * used C++ compiler: ‘clang version 18.1.4’ * checking C++ specification ... OK Not all R platforms support C++17 * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s/15s] OK * checking Rd files ... NOTE checkRd: (-1) azp_greedy.Rd:36: Lost braces; missing escapes or markup? 36 | \item{scale_method}{(optional) One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) azp_sa.Rd:42: Lost braces; missing escapes or markup? 42 | \item{scale_method}{(optional) One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) azp_tabu.Rd:42: Lost braces; missing escapes or markup? 42 | \item{scale_method}{(optional) One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) local_bijoincount.Rd:27: Lost braces; missing escapes or markup? 27 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_bimoran.Rd:26: Lost braces; missing escapes or markup? 26 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_g.Rd:26: Lost braces; missing escapes or markup? 26 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_geary.Rd:26: Lost braces; missing escapes or markup? 26 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_gstar.Rd:26: Lost braces; missing escapes or markup? 26 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_joincount.Rd:26: Lost braces; missing escapes or markup? 26 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_moran.Rd:26: Lost braces; missing escapes or markup? 26 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_moran_eb.Rd:27: Lost braces; missing escapes or markup? 27 | computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_multigeary.Rd:26: Lost braces; missing escapes or markup? 26 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_multijoincount.Rd:27: Lost braces; missing escapes or markup? 27 | LISA computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_multiquantilelisa.Rd:35: Lost braces; missing escapes or markup? 35 | computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) local_quantilelisa.Rd:33: Lost braces; missing escapes or markup? 33 | computation. Options are {'complete', 'lookup'}. Default is 'complete'.} | ^ checkRd: (-1) maxp_greedy.Rd:34: Lost braces; missing escapes or markup? 34 | \item{scale_method}{(optional) One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) maxp_sa.Rd:40: Lost braces; missing escapes or markup? 40 | \item{scale_method}{(optional) One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) maxp_tabu.Rd:40: Lost braces; missing escapes or markup? 40 | \item{scale_method}{(optional) One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) neighbor_match_test.Rd:24-25: Lost braces 24 | \item{scale_method}{(optional) One of the scaling methods {'raw', | ^ checkRd: (-1) neighbor_match_test.Rd:29: Lost braces; missing escapes or markup? 29 | measure the distance between input data. Options are {'euclidean', 'manhattan'}. Default is 'euclidean'.} | ^ checkRd: (-1) redcap.Rd:34: Lost braces; missing escapes or markup? 34 | \item{scale_method}{(optional) One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) schc.Rd:32: Lost braces; missing escapes or markup? 32 | \item{scale_method}{One of the scaling methods {'raw', 'standardize', 'demean', 'mad', 'range_standardize', 'range_adjust'} to apply on input data. Default is 'standardize' (Z-score normalization).} | ^ checkRd: (-1) skater.Rd:33-34: Lost braces 33 | \item{scale_method}{One of the scaling methods {'raw', 'standardize', | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking PDF version of manual ... [11s/16s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE