* installing *source* package ‘rgenoud’ ... ** package ‘rgenoud’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c change_order.cpp -o change_order.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c eval.cpp -o eval.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c evaluate.cpp -o evaluate.o evaluate.cpp:4056:8: warning: variable 'nvars' set but not used [-Wunused-but-set-variable] 4056 | long nvars; | ^ evaluate.cpp:4093:8: warning: variable 'nvars' set but not used [-Wunused-but-set-variable] 4093 | long nvars; | ^ 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c frange_ran.cpp -o frange_ran.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c genoud.cpp -o genoud.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gradient.cpp -o gradient.o genoud.cpp:66:8: warning: variable 'LVMreturn' set but not used [-Wunused-but-set-variable] 66 | long LVMreturn; | ^ gradient.cpp:208:10: warning: variable 'u' set but not used [-Wunused-but-set-variable] 208 | double u, fplus, fminus; | ^ gradient.cpp:209:10: warning: variable 'epsuse' set but not used [-Wunused-but-set-variable] 209 | double epsuse; | ^ gradient.cpp:405:3: warning: unused label 'FD1' [-Wunused-label] 405 | FD1: | ^~~~ gradient.cpp:413:3: warning: unused label 'FD2' [-Wunused-label] 413 | FD2: | ^~~~ gradient.cpp:420:3: warning: unused label 'FD3' [-Wunused-label] 420 | FD3: | ^~~~ 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o 5 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c math.cpp -o math.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c multiply.cpp -o multiply.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c numerics.cpp -o numerics.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c operators.cpp -o operators.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c print_format.cpp -o print_format.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rgenoud.cpp -o rgenoud.o print_format.cpp:34:19: warning: variable 'fint' set but not used [-Wunused-but-set-variable] 34 | int i, j, ltmp, fint; | ^ 1 warning generated. rgenoud.cpp:143:9: warning: variable 'StartingValues' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 143 | if (nStartingValues > 0) { | ^~~~~~~~~~~~~~~~~~~ rgenoud.cpp:167:35: note: uninitialized use occurs here 167 | MainStructure->StartingValues=StartingValues; | ^~~~~~~~~~~~~~ rgenoud.cpp:143:5: note: remove the 'if' if its condition is always true 143 | if (nStartingValues > 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~ rgenoud.cpp:140:28: note: initialize the variable 'StartingValues' to silence this warning 140 | double **StartingValues; | ^ | = nullptr 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o rgenoud.so change_order.o eval.o evaluate.o frange_ran.o genoud.o gradient.o init.o math.o multiply.o numerics.o operators.o print_format.o rgenoud.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rgenoud/src' installing to /data/gannet/ripley/R/packages/tests-clang/rgenoud.Rcheck/00LOCK-rgenoud/00new/rgenoud/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgenoud)