* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/rchemo.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘rchemo/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rchemo’ version ‘0.1-1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rchemo’ can be installed ... [14s/16s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/rchemo-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [30s/36s] OK
* checking Rd files ... NOTE
checkRd: (-1) aicplsr.Rd:35: Lost braces
    35 | \item{correct}{Logical. If code{TRUE} (default), the AICc corection is applied to the criteria.}
       |                                ^
checkRd: (-1) knnda.Rd:53: Lost braces
    53 | For \code{knnda}{list with input arguments}
       |                 ^
checkRd: (-1) knnr.Rd:53: Lost braces
    53 | For \code{knnr}{list with input arguments}
       |                ^
checkRd: (-1) plsda_agg.Rd:59: Lost braces
    59 | the model((\code{fm})=(\code{T}): X-scores matrix; (\code{P}): X-loading matrix;(\code{R}): The PLS projection matrix (p,nlv); (\code{W}): X-loading weights matrix ;(\code{C}): The Y-loading weights matrix; (\code{TT}): the X-score normalization factor; (\code{xmeans}): the centering vector of X (p,1);  (\code{ymeans}): the centering vector of Y (q,1); (\code{weights}): vector of observation weights; (\code{U}): intermediate output),  \code{lev}{classes}, \code{ni}{number of observations in each class}}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ^
checkRd: (-1) plsda_agg.Rd:59: Lost braces
    59 | the model((\code{fm})=(\code{T}): X-scores matrix; (\code{P}): X-loading matrix;(\code{R}): The PLS projection matrix (p,nlv); (\code{W}): X-loading weights matrix ;(\code{C}): The Y-loading weights matrix; (\code{TT}): the X-score normalization factor; (\code{xmeans}): the centering vector of X (p,1);  (\code{ymeans}): the centering vector of Y (q,1); (\code{weights}): vector of observation weights; (\code{U}): intermediate output),  \code{lev}{classes}, \code{ni}{number of observations in each class}}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ^
checkRd: (-1) xfit.Rd:44: Lost braces
    44 | For \code{xfit}{matrix of fitted values}
       |                ^
checkRd: (-1) xfit.Rd:46: Lost braces
    46 | For \code{xresid}{matrix of residuals}
       |                  ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [18s/22s] OK
* checking PDF version of manual ... [14s/19s] OK
* checking HTML version of manual ... [8s/12s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE