* installing *source* package ‘rSpectral’ ... ** package ‘rSpectral’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rSpectral/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c SpectralModularity.cpp -o SpectralModularity.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c edge.cpp -o edge.o SpectralModularity.cpp:88:12: warning: variable 'KK' set but not used [-Wunused-but-set-variable] 88 | int k,Ng,KK; | ^ SpectralModularity.cpp:197:7: warning: unused variable 'i' [-Wunused-variable] 197 | int i,k,Ng,KK; | ^ SpectralModularity.cpp:258:10: warning: variable 'sum' set but not used [-Wunused-but-set-variable] 258 | double sum=0.0; | ^ SpectralModularity.cpp:284:7: warning: unused variable 'i' [-Wunused-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^ SpectralModularity.cpp:284:9: warning: unused variable 'j' [-Wunused-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^ SpectralModularity.cpp:284:15: warning: variable 'KK' set but not used [-Wunused-but-set-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^ SpectralModularity.cpp:284:21: warning: unused variable 'indx_max' [-Wunused-variable] 284 | int i,j,k,K,KK,Ng,indx_max; | ^~~~~~~~ SpectralModularity.cpp:285:8: warning: variable 'status' set but not used [-Wunused-but-set-variable] 285 | bool status; | ^ SpectralModularity.cpp:404:11: warning: unused variable 'J' [-Wunused-variable] 404 | int i,j,J,k,KK,Ng; | ^ SpectralModularity.cpp:404:15: warning: variable 'KK' set but not used [-Wunused-but-set-variable] 404 | int i,j,J,k,KK,Ng; | ^ SpectralModularity.cpp:566:30: warning: variable 'sFixed' set but not used [-Wunused-but-set-variable] 566 | int u,v,i,Ng,node_K,neig_K,sFixed; | ^ SpectralModularity.cpp:604:34: warning: variable 'sFixed' set but not used [-Wunused-but-set-variable] 604 | int u,v,i,j,k,Ng,node_K,neig_K,sFixed; | ^ SpectralModularity.cpp:823:9: warning: unused variable 'count' [-Wunused-variable] 823 | int count = 0; | ^~~~~ SpectralModularity.cpp:1057:13: warning: unused variable 'p' [-Wunused-variable] 1057 | int i,j,k,p,KK,Ng; | ^ In file included from SpectralModularity.cpp:1: ./SpectralModularity.h:73:10: warning: private field 'usedBgi' is not used [-Wunused-private-field] 73 | bool usedBgi; | ^ 15 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c network.cpp -o network.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c rSpectral.cpp -o rSpectral.o rSpectral.cpp:275:11: warning: unused variable 'cal' [-Wunused-variable] 275 | int cal = model->calculateSpectralModularity(); | ^~~ rSpectral.cpp:218:7: warning: variable 'alphaNumeric' set but not used [-Wunused-but-set-variable] 218 | int alphaNumeric = 1; | ^ 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c readfile.cpp -o readfile.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c vertex.cpp -o vertex.o readfile.cpp:358:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] 358 | int i,j,k,KK; | ^ 1 warning generated. vertex.cpp:112:7: warning: unused variable 'i' [-Wunused-variable] 112 | int i; | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o rSpectral.so RcppExports.o SpectralModularity.o edge.o network.o rSpectral.o readfile.o vertex.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rSpectral/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/rSpectral/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/rSpectral/src' installing to /data/gannet/ripley/R/packages/tests-clang/rSpectral.Rcheck/00LOCK-rSpectral/00new/rSpectral/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rSpectral)