* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/qwraps2.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘qwraps2/DESCRIPTION’ ... OK
* this is package ‘qwraps2’ version ‘0.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘qwraps2’ can be installed ... [71s/71s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/qwraps2-00install.html' for details.
* used C++ compiler: ‘clang version 18.1.4’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/24s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Undeclared packages ‘Hmisc’, ‘htmlTable’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [35s/41s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [49s/61s] OK
  Running ‘test-confusion_matrix.R’
  Running ‘test-datasets.R’
  Running ‘test-extract.R’
  Running ‘test-file-check.R’
  Running ‘test-frmt.R’
  Running ‘test-frmtp.R’
  Running ‘test-gmean_sd.R’
  Running ‘test-lazyload.R’
  Running ‘test-ll.R’
  Running ‘test-logit.R’
  Running ‘test-mean_ci.R’
  Running ‘test-mean_sd.R’
  Running ‘test-mean_se.R’
  Running ‘test-median_iqr.R’
  Running ‘test-n_perc.R’
  Running ‘test-pkg_check.R’
  Running ‘test-plots.R’ [27s/31s]
  Running ‘test-qable.R’
  Running ‘test-qkplot.R’
  Running ‘test-qroc.R’
  Running ‘test-set_diff.R’
  Running ‘test-spin_comments.R’
  Running ‘test-summary_table.R’
  Running ‘test-traprule.R’
  Running ‘test-utilities.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [104s/135s] OK
* checking PDF version of manual ... [9s/15s] OK
* checking HTML version of manual ... NOTE
Found the following HTML validation problems:
confusion_matrix.html:236:1 (confusion_matrix.Rd:73): Warning: trimming empty <li>
confusion_matrix.html:238:1 (confusion_matrix.Rd:74): Warning: trimming empty <li>
confusion_matrix.html:240:1 (confusion_matrix.Rd:75): Warning: trimming empty <li>
confusion_matrix.html:235:1 (confusion_matrix.Rd:73): Warning: trimming empty <ul>
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs