* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/qdap.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘qdap/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘qdap’ version ‘2.4.6’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘qdap’ can be installed ... [60s/73s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/qdap-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [133s/161s] OK * checking Rd files ... NOTE checkRd: (-1) check_text.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) check_text.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) new_project.Rd:30-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:35-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:43: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:44: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:45-54: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:55-60: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:63: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:65-71: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:67: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:72: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:73: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:74-79: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:76: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:82: Lost braces in \itemize; meant \describe ? checkRd: (-1) new_project.Rd:83: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.lexical.Rd:24: Lost braces 24 | \item{random.order}{logical. If code{TRUE} plot words in random order. If \code{FALSE}, they will be plotted in decreasing frequency.} | ^ checkRd: (-1) trans_venn.Rd:81: Lost braces 81 | \{code{\link[qdap]{Dissimilarity}} measures labeling the edges between nodes | ^ checkRd: (-1) word_stats.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) word_stats.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Undeclared package ‘gplots’ in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [30s/34s] OK Running ‘testthat.R’ [30s/33s] * checking PDF version of manual ... [31s/40s] OK * checking HTML version of manual ... [26s/46s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs