* installing *source* package ‘pureseqtmr’ ...
** package ‘pureseqtmr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pureseqtmr/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c RcppExports.cpp -o RcppExports.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c calc_distance_to_tmh_center_from_topology_str_cpp_stl.cpp -o calc_distance_to_tmh_center_from_topology_str_cpp_stl.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c load_fasta_file_as_tibble_cpp_raw.cpp -o load_fasta_file_as_tibble_cpp_raw.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c load_fasta_file_as_tibble_cpp_stl.cpp -o load_fasta_file_as_tibble_cpp_stl.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o pureseqtmr.so RcppExports.o calc_distance_to_tmh_center_from_topology_str_cpp_stl.o load_fasta_file_as_tibble_cpp_raw.o load_fasta_file_as_tibble_cpp_stl.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pureseqtmr/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pureseqtmr/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pureseqtmr/src'
installing to /data/gannet/ripley/R/packages/tests-clang/pureseqtmr.Rcheck/00LOCK-pureseqtmr/00new/pureseqtmr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pureseqtmr)