* installing *source* package ‘psqn’ ... ** package ‘psqn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/psqn/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c r-api.cpp -o r-api.o In file included from RcppExports.cpp:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:5: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:31: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:37: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /data/gannet/ripley/R/test-clang/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c test-intrapolate.cpp -o test-intrapolate.o In file included from r-api.cpp:6: In file included from ../inst/include/psqn-Rcpp-wrapper.h:9: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigen.h:25: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/RcppEigenForward.h:26: In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/RcppCommon.h:30: In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/r/headers.h:62: In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/platform/compiler.h:153: In file included from /usr/local/clang18/bin/../include/c++/v1/unordered_map:598: /usr/local/clang18/bin/../include/c++/v1/__memory/allocator.h:176:81: warning: destructor called on non-final 'r_worker_psqn' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 176 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); } | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/allocator_traits.h:311:9: note: in instantiation of member function 'std::allocator::destroy' requested here 311 | __a.destroy(__p); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:926:23: note: in instantiation of function template specialization 'std::allocator_traits>::destroy' requested here 926 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end)); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:920:5: note: in instantiation of member function 'std::vector::__base_destruct_at_end' requested here 920 | __base_destruct_at_end(this->__begin_); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:490:16: note: in instantiation of member function 'std::vector::__clear' requested here 490 | __vec_.__clear(); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:501:67: note: in instantiation of member function 'std::vector::__destroy_vector::operator()' requested here 501 | _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); } | ^ r-api.cpp:404:30: note: in instantiation of member function 'std::vector::~vector' requested here 404 | std::vector funcs; | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/allocator.h:176:87: note: qualify call to silence this warning 176 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); } | ^ /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c test-lp.cpp -o test-lp.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c test-richardson-extrapolation.cpp -o test-richardson-extrapolation.o /usr/local/clang18/bin/../include/c++/v1/__memory/allocator.h:176:81: warning: destructor called on non-final 'r_worker_optimizer_generic' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 176 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); } | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/allocator_traits.h:311:9: note: in instantiation of member function 'std::allocator::destroy' requested here 311 | __a.destroy(__p); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:926:23: note: in instantiation of function template specialization 'std::allocator_traits>::destroy' requested here 926 | __alloc_traits::destroy(__alloc(), std::__to_address(--__soon_to_be_end)); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:920:5: note: in instantiation of member function 'std::vector::__base_destruct_at_end' requested here 920 | __base_destruct_at_end(this->__begin_); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:490:16: note: in instantiation of member function 'std::vector::__clear' requested here 490 | __vec_.__clear(); | ^ /usr/local/clang18/bin/../include/c++/v1/vector:501:67: note: in instantiation of member function 'std::vector::__destroy_vector::operator()' requested here 501 | _LIBCPP_CONSTEXPR_SINCE_CXX20 _LIBCPP_HIDE_FROM_ABI ~vector() { __destroy_vector (*this)(); } | ^ r-api.cpp:1284:43: note: in instantiation of member function 'std::vector::~vector' requested here 1284 | std::vector funcs; | ^ /usr/local/clang18/bin/../include/c++/v1/__memory/allocator.h:176:87: note: qualify call to silence this warning 176 | _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_HIDE_FROM_ABI void destroy(pointer __p) { __p->~_Tp(); } | ^ /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I../inst/include/ -fopenmp -DPSQN_W_LAPACK -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c test-runner.cpp -o test-runner.o 7 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o psqn.so RcppExports.o r-api.o test-intrapolate.o test-lp.o test-richardson-extrapolation.o test-runner.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/psqn/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/psqn/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/psqn/src' installing to /data/gannet/ripley/R/packages/tests-clang/psqn.Rcheck/00LOCK-psqn/00new/psqn/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (psqn)