* installing *source* package ‘popPCR’ ...
** package ‘popPCR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using Fortran compiler: ‘flang-new version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c EMMIXskew_init.c -o EMMIXskew_init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c density.c -o density.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c density2.f -o density2.o
./density2.f:195:11: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy( p, wy, 1, wx, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./density2.f:179:9: previous reference to 'dcopy'
call dcopy( p, delta(1,k), 1, wx, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./density2.f:641:11: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy( p, wy, 1, wx, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./density2.f:179:9: previous reference to 'dcopy'
call dcopy( p, delta(1,k), 1, wx, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./density2.f:870:11: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
call dcopy( p, wy, 1, wx, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./density2.f:179:9: previous reference to 'dcopy'
call dcopy( p, delta(1,k), 1, wx, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c distance.c -o distance.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c estep.c -o estep.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mixda.f -o mixda.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mixem.c -o mixem.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mixinit.c -o mixinit.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mixmsn.f -o mixmsn.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mixmsnda.f -o mixmsnda.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mixmst.f -o mixmst.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mixmstda.f -o mixmstda.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mixmvnda.f -o mixmvnda.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c mixmvtda.f -o mixmvtda.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c module.c -o module.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c mstep.c -o mstep.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c predmixdamsn.f -o predmixdamsn.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c predmixdamst.f -o predmixdamst.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c scaestep.c -o scaestep.o
/usr/local/clang18/bin/flang-new -fpic -O2 -pedantic -c scamstep.f -o scamstep.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c zeroin.c -o zeroin.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o popPCR.so EMMIXskew_init.o density.o density2.o distance.o estep.o mixda.o mixem.o mixinit.o mixmsn.o mixmsnda.o mixmst.o mixmstda.o mixmvnda.o mixmvtda.o module.o mstep.o predmixdamsn.o predmixdamst.o scaestep.o scamstep.o zeroin.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/popPCR/src'
installing to /data/gannet/ripley/R/packages/tests-clang/popPCR.Rcheck/00LOCK-popPCR/00new/popPCR/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (popPCR)