* installing *source* package ‘pomdpSolve’ ...
** package ‘pomdpSolve’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src'
(cd pomdp-solve && CXX="/usr/local/clang18/bin/clang++ -std=gnu++17" CC="/usr/local/clang18/bin/clang" CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic" CXXFLAGS="-O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 " AR="ar" RANLIB="ranlib" make clean)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve'
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/mdp'
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/mdp'
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/lp-solve'
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/lp-solve'
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/laspack'
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/laspack'
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve'
(cd pomdp-solve && CXX="/usr/local/clang18/bin/clang++ -std=gnu++17" CC="/usr/local/clang18/bin/clang" CFLAGS="-O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic" CXXFLAGS="-O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 " AR="ar" RANLIB="ranlib" make)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve'
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/mdp'
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o parser.o parser.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o scanner.o scanner.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o imm-reward.o imm-reward.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o parse_err.o parse_err.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o sparse-matrix.o sparse-matrix.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o mdp.o mdp.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o parse_hash.o parse_hash.c
ar -rcs libmdp.a parser.o scanner.o imm-reward.o parse_err.o sparse-matrix.o mdp.o parse_hash.o
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/mdp'
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/lp-solve'
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o y.tab.o y.tab.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o lex.yy.o lex.yy.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o debug.o debug.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o hash.o hash.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o lpkit.o lpkit.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o alpha.o alpha.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o presolve.o presolve.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o belief.o belief.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o read.o read.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o solve.o solve.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o cmd-line.o cmd-line.c
ar -rcs ./liblp-solve.a y.tab.o lex.yy.o debug.o hash.o lpkit.o presolve.o read.o solve.o
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/lp-solve'
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/laspack'
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o eigenval.o eigenval.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o matrix.o matrix.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o qmatrix.o qmatrix.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o errhandl.o errhandl.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o mlsolv.o mlsolv.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o rtc.o rtc.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o factor.o factor.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o operats.o operats.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o vector.o vector.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o itersolv.o itersolv.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o precond.o precond.c
ar -rcs ./liblaspack.a eigenval.o matrix.o qmatrix.o errhandl.o mlsolv.o rtc.o factor.o operats.o vector.o itersolv.o precond.o
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve/laspack'
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o common.o common.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o cross-sum.o cross-sum.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o enumeration.o enumeration.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o finite-grid.o finite-grid.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o global.o global.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o inc-prune.o inc-prune.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o linear-support.o linear-support.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o lp-interface.o lp-interface.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o neighbor.o neighbor.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o pomdp-solve-options.o pomdp-solve-options.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o params.o params.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o parsimonious.o parsimonious.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o pg.o pg.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o pomdp.o pomdp.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o pomdp-solve.o pomdp-solve.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o projection.o projection.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o random.o random.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o region.o region.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o signal-handler.o signal-handler.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o stats.o stats.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o timing.o timing.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o two-pass.o two-pass.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o vertex-enum.o vertex-enum.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o witness.o witness.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o xalloc.o xalloc.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o zlz_speedup.o zlz_speedup.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o sim.o sim.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o mcgs.o mcgs.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o associative-array.o associative-array.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o command-line.o command-line.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o config-file.o config-file.c
config-file.c:126:7: warning: variable 'line_no' set but not used [-Wunused-but-set-variable]
126 | int line_no = 0;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o program-options.o program-options.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -c -o main.o main.c
/usr/local/clang18/bin/clang -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -fpic -L./mdp -L./lp-solve -L./laspack alpha.o belief.o cmd-line.o common.o cross-sum.o enumeration.o finite-grid.o global.o inc-prune.o linear-support.o lp-interface.o neighbor.o pomdp-solve-options.o params.o parsimonious.o pg.o pomdp.o pomdp-solve.o projection.o random.o region.o signal-handler.o stats.o timing.o two-pass.o vertex-enum.o witness.o xalloc.o zlz_speedup.o sim.o mcgs.o associative-array.o command-line.o config-file.o program-options.o main.o -o pomdp-solve -lm -lmdp -llp-solve -llaspack
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src/pomdp-solve'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pomdpSolve/src'
installing via 'install.libs.R' to /data/gannet/ripley/R/packages/tests-clang/pomdpSolve.Rcheck/00LOCK-pomdpSolve/00new/pomdpSolve
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pomdpSolve)