* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/poissonMT.Rcheck’ * using R Under development (unstable) (2024-05-02 r86508) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.5 flang-new version 18.1.5 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘poissonMT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘poissonMT’ version ‘0.3-5’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘poissonMT’ can be installed ... [7s/29s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/poissonMT-00install.html' for details. * used C compiler: ‘clang version 18.1.5’ * used Fortran compiler: ‘flang-new version 18.1.5’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s/30s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking examples ... ERROR Running examples in ‘poissonMT-Ex.R’ failed The error most likely occurred in: > ### Name: glmrobMT > ### Title: Robust Fitting of Poisson Generalized Linear Models using MT > ### robust method > ### Aliases: glmrobMT > ### Keywords: robust regression nonlinear > > ### ** Examples > > data(epilepsy) > Efit1 <- glm(Ysum ~ Age10 + Base4*Trt, family=poisson, data=epilepsy) > > x <- model.matrix( ~ Age10 + Base4*Trt, data=epilepsy) > poissonMTsetwd(tempdir()) > Efit2 <- glmrobMT(x=x, y=epilepsy$Ysum) Computing initial estimate * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [20s/38s] OK Running ‘poissonL2T-savedvalues.R’ Running ‘poissonL2T.R’ Running ‘poissonMT-savedvalues.R’ Running ‘poissonMT.R’ Running ‘poissonMTinitial-savedvalues.R’ Running ‘poissonMTinitial.R’ Running ‘poissonMTinitialParallel-savedvalues.R’ Running ‘poissonMTinitialParallel.R’ [6s/13s] * checking PDF version of manual ... [9s/22s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR