* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/plink.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘plink/DESCRIPTION’ ... OK
* this is package ‘plink’ version ‘1.5-1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘plink’ can be installed ... [49s/58s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/plink-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [49s/59s] OK
* checking Rd files ... NOTE
checkRd: (-1) as.weight.Rd:56-60: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:62-63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:68-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:72-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:78-80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:82-83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:85-92: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:94-96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) as.weight.Rd:98-104: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:13-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:39-81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:45-46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:54: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:57: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:63: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:71-72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:73-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:75-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:85-86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:88-89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:91-93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:95-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plink-package.Rd:100: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [29s/34s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [27s/34s] OK
* checking PDF version of manual ... [11s/17s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE