* installing *source* package ‘perms’ ...
** package ‘perms’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/perms/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c C_get_log_permanent.c -o C_get_log_permanent.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c get_alphabetagamma.c -o get_alphabetagamma.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c get_log_ML.c -o get_log_ML.o
get_log_ML.c:12:6: warning: unused variable 'debug' [-Wunused-variable]
   12 |         int debug = *(INTEGER(debugSEXP));
      |             ^~~~~
get_log_ML.c:74:6: warning: unused variable 'debug' [-Wunused-variable]
   74 |         int debug = *(INTEGER(debugSEXP));
      |             ^~~~~
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c help_functions.c -o help_functions.o
help_functions.c:70:6: warning: variable 'collcount' set but not used [-Wunused-but-set-variable]
   70 |         int collcount = 0;
      |             ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c methods.c -o methods.o
methods.c:588:6: warning: variable 'cc' set but not used [-Wunused-but-set-variable]
  588 |         int cc = 0;
      |             ^
methods.c:843:6: warning: variable 'num_nonzeros' set but not used [-Wunused-but-set-variable]
  843 |         int num_nonzeros = 0;
      |             ^
2 warnings generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c methods_sparse.c -o methods_sparse.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c xxhash.c -o xxhash.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o perms.so C_get_log_permanent.o get_alphabetagamma.o get_log_ML.o help_functions.o init.o methods.o methods_sparse.o xxhash.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/perms/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/perms/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/perms/src'
installing to /data/gannet/ripley/R/packages/tests-clang/perms.Rcheck/00LOCK-perms/00new/perms/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (perms)