* installing *source* package ‘pcalg’ ... ** package ‘pcalg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I"../inst/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c constraint.cpp -o constraint.o In file included from constraint.cpp:8: In file included from ../inst/include/pcalg/constraint.hpp:8: ../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 17 | #define NDEBUG | ^ :1:9: note: previous definition is here 1 | #define NDEBUG 1 | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I"../inst/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gies.cpp -o gies.o In file included from gies.cpp:21: In file included from ../inst/include/pcalg/constraint.hpp:8: ../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 17 | #define NDEBUG | ^ :1:9: note: previous definition is here 1 | #define NDEBUG 1 | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I"../inst/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c greedy.cpp -o greedy.o In file included from greedy.cpp:8: In file included from ../inst/include/pcalg/greedy.hpp:11: In file included from ../inst/include/pcalg/score.hpp:12: ../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 17 | #define NDEBUG | ^ :1:9: note: previous definition is here 1 | #define NDEBUG 1 | ^ greedy.cpp:862:30: warning: unused variable 'vi' [-Wunused-variable] 862 | std::vector::iterator vi; | ^~ 2 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-clang/BH/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -I"../inst/include" -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c score.cpp -o score.o In file included from score.cpp:6: In file included from ../inst/include/pcalg/score.hpp:12: ../inst/include/pcalg/armaLapack.hpp:17:9: warning: 'NDEBUG' macro redefined [-Wmacro-redefined] 17 | #define NDEBUG | ^ :1:9: note: previous definition is here 1 | #define NDEBUG 1 | ^ score.cpp:170:29: warning: unused variable 'vi' [-Wunused-variable] 170 | std::vector::iterator vi; | ^~ 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o pcalg.so constraint.o gies.o greedy.o init.o score.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/pcalg/src' installing to /data/gannet/ripley/R/packages/tests-clang/pcalg.Rcheck/00LOCK-pcalg/00new/pcalg/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcalg)