* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/optrefine.Rcheck’
* using R Under development (unstable) (2024-04-24 r86484)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 18.1.4
    flang-new version 18.1.4
* running under: Fedora Linux 36 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘optrefine/DESCRIPTION’ ... OK
* this is package ‘optrefine’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘gurobi’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optrefine’ can be installed ... [10s/12s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/optrefine-00install.html' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s/20s] OK
* checking Rd files ... NOTE
checkRd: (-1) best_split.Rd:61-63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) best_split.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) best_split.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) best_split.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) best_split.Rd:68-69: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) best_split.Rd:70-71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) best_split.Rd:72-73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rand_pvals.Rd:84-85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rand_pvals.Rd:86-89: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rand_pvals.Rd:90-91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rand_pvals.Rd:92-93: Lost braces in \itemize; meant \describe ?
checkRd: (-1) rand_pvals.Rd:39-43: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rand_pvals.Rd:44-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) rand_pvals.Rd:49-54: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:59-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:63-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:71-72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:73-74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:75-76: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) refine.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:33-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:35-36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:38-39: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:40-41: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) refine.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) split_stratum.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) split_stratum.Rd:57-58: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) split_stratum.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) split_stratum.Rd:60-61: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) split_stratum.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) split_stratum.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) table_rand_pvals.Rd:54-55: Lost braces in \itemize; meant \describe ?
checkRd: (-1) table_rand_pvals.Rd:56-59: Lost braces in \itemize; meant \describe ?
checkRd: (-1) table_rand_pvals.Rd:60-61: Lost braces in \itemize; meant \describe ?
checkRd: (-1) table_rand_pvals.Rd:62-63: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [36s/43s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [48s/55s] OK
  Running ‘testthat.R’ [48s/55s]
* checking PDF version of manual ... [8s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs