* installing *source* package ‘nfer’ ...
** package ‘nfer’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/nfer/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c analysis.c -o analysis.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c ast.c -o ast.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c astutil.c -o astutil.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c constants.c -o constants.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c debug.c -o debug.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dict.c -o dict.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dsl.tab.c -o dsl.tab.o
dsl.tab.c:1393:9: warning: variable 'yynerrs' set but not used [-Wunused-but-set-variable]
1393 | int yynerrs = 0;
| ^
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dsl.yy.c -o dsl.yy.o
gensrc/parser/dsl.yy.c:2213:24: warning: unused function 'yy_fatal_error' [-Wunused-function]
2213 | static void yynoreturn yy_fatal_error (const char* msg , yyscan_t yyscanner)
| ^~~~~~~~~~~~~~
1 warning generated.
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c expression.c -o expression.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c fields.c -o fields.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c file.c -o file.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c generate.c -o generate.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c imports.c -o imports.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c labels.c -o labels.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c learn.c -o learn.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c literals.c -o literals.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c log.c -o log.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c map.c -o map.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c memory.c -o memory.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c nfer.c -o nfer.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c pool.c -o pool.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rinterface.c -o rinterface.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c stack.c -o stack.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c static.c -o static.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c strings.c -o strings.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c typecheck.c -o typecheck.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -DRPACKAGE -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c types.c -o types.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o nfer.so analysis.o ast.o astutil.o constants.o debug.o dict.o dsl.tab.o dsl.yy.o expression.o fields.o file.o generate.o imports.o labels.o learn.o literals.o log.o map.o memory.o nfer.o pool.o rinterface.o stack.o static.o strings.o typecheck.o types.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/nfer/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/nfer/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/nfer/src'
installing to /data/gannet/ripley/R/packages/tests-clang/nfer.Rcheck/00LOCK-nfer/00new/nfer/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nfer)