Install log for 'neojags'

* installing *source* package ‘neojags’ ...
** package ‘neojags’ successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
configure: Setting compile and link flags according to pkg-config
configure: Compile flags are -I/usr/local/clang/include/JAGS 
configure: Link flags are -L/usr/local/clang/lib64 -ljags 
checking for gcc... /usr/local/clang18/bin/clang
checking whether we are using the GNU C compiler... no
checking whether /usr/local/clang18/bin/clang accepts -g... no
checking for /usr/local/clang18/bin/clang option to accept ISO C89... unsupported
checking for jags_version in -ljags... yes
checking version of JAGS library... configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘clang version 18.1.4’
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/neojags/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/DFunction.cc -o distributions/jags/DFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/DPQFunction.cc -o distributions/jags/DPQFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/PFunction.cc -o distributions/jags/PFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/QFunction.cc -o distributions/jags/QFunction.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/jags/RScalarDist.cc -o distributions/jags/RScalarDist.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DGmsnburr.cc -o distributions/DGmsnburr.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DMsnburr.cc -o distributions/DMsnburr.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DMsnburr2a.cc -o distributions/DMsnburr2a.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DSkewnf.cc -o distributions/DSkewnf.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DSkewtf.cc -o distributions/DSkewtf.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DLep.cc -o distributions/DLep.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DFossep.cc -o distributions/DFossep.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c distributions/DJsep.cc -o distributions/DJsep.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c init.c -o init.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c neojags.cc -o neojags.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I/usr/local/clang/include/JAGS  -D JAGS_MAJOR_FORCED=0 -D JAGS_MAJOR_ASSUMED=0  -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3   -c testneojags.cc -o testneojags.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o neojags.so distributions/jags/DFunction.o distributions/jags/DPQFunction.o distributions/jags/PFunction.o distributions/jags/QFunction.o distributions/jags/RScalarDist.o distributions/DGmsnburr.o distributions/DMsnburr.o distributions/DMsnburr2a.o distributions/DSkewnf.o distributions/DSkewtf.o distributions/DLep.o distributions/DFossep.o distributions/DJsep.o init.o neojags.o testneojags.o -L/usr/local/clang/lib64 -ljags -ljrmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/neojags/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/neojags/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/neojags/src'
installing to /data/gannet/ripley/R/packages/tests-clang/neojags.Rcheck/00LOCK-neojags/00new/neojags/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (neojags)