* installing *source* package ‘mpath’ ...
** package ‘mpath’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
using Fortran compiler: ‘flang-new version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mpath/src'
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c activeset.f -o activeset.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c cfuns.c -o cfuns.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c compute_g.f -o compute_g.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c compute_h.f -o compute_h.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c compute_u.f -o compute_u.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c compute_v.f -o compute_v.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c compute_wt3.f -o compute_wt3.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c compute_z.f -o compute_z.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c dnbinom.f -o dnbinom.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c dpois.f -o dpois.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c factorial.f -o factorial.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c gfunc.f -o gfunc.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c glmreg_fit_fortran.f -o glmreg_fit_fortran.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c glmregnb_fortran.f -o glmregnb_fortran.o
./glmregnb_fortran.f:68:9: warning: Reference to the procedure 'dcopy' has an implicit interface that is distinct from another reference: incompatible dummy argument #2: incompatible dummy data object shapes
          call dcopy(m, beta_1, 1, beta(1:m, k), 1)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./glmregnb_fortran.f:36:13: previous reference to 'dcopy'
              call dcopy(n, yhat, 1, mustart, 1)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c gradient.f -o gradient.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c init.f -o init.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c irglmreg_ad.f -o irglmreg_ad.o
./irglmreg_ad.f:113:19: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object attributes
                    call dblepr("start=", -1, start, m+1)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./irglmreg_ad.f:111:19: previous reference to 'dblepr'
                    call dblepr("beta_1=", -1, beta_1, m_act)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./irglmreg_ad.f:115:16: warning: Reference to the procedure 'irglmreg_onelambda' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object attributes
                 call irglmreg_onelambda(x,y,weights,n,m,start, etastart,
                 ^
./irglmreg_ad.f:99:13: previous reference to 'irglmreg_onelambda'
              call irglmreg_onelambda(x_act, y,weights, n,m_act,start_act,
              ^
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c irglmreg_fortran.f -o irglmreg_fortran.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c irglmreg_onelambda.f -o irglmreg_onelambda.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c lmax_zipath.f -o lmax_zipath.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c lmnetGLM.f -o lmnetGLM.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c lmnetGaussian.f -o lmnetGaussian.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c loss.f -o loss.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c loss2.f -o loss2.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c loss2_ccsvm.f -o loss2_ccsvm.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c loss3.f -o loss3.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c midloop.f -o midloop.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c midloopGLM.f -o midloopGLM.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG   -isystem /usr/local/clang18/include -I/usr/local/clang/include    -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c mpath_init.c -o mpath_init.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c mutil.f -o mutil.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c nclreg_ad.f -o nclreg_ad.o
./nclreg_ad.f:96:19: warning: Reference to the procedure 'dblepr' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object attributes
                    call dblepr("start=", -1, start, m+1)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./nclreg_ad.f:94:19: previous reference to 'dblepr'
                    call dblepr("beta_1=", -1, beta_1, m_act)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./nclreg_ad.f:98:16: warning: Reference to the procedure 'nclreg_onelambda' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object attributes
                 call nclreg_onelambda(x, y,weights, n,m,start, etastart,
                 ^
./nclreg_ad.f:83:13: previous reference to 'nclreg_onelambda'
              call nclreg_onelambda(x_act, y,weights, n,m_act,start_act,
              ^
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c nclreg_fortran.f -o nclreg_fortran.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c nclreg_onelambda.f -o nclreg_onelambda.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c outloop.f -o outloop.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c outprod.f -o outprod.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c theta_ml.f -o theta_ml.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c update_wt.f -o update_wt.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c update_wt_ccsvm.f -o update_wt_ccsvm.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c zi_onelambda.f -o zi_onelambda.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c ziloss.f -o ziloss.o
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c zipath_active.f -o zipath_active.o
./zipath_active.f:181:16: warning: Reference to the procedure 'zi_onelambda' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object attributes
                 call zi_onelambda(x, z, y, y1, probi, weights, n, kx,
                 ^
./zipath_active.f:154:13: previous reference to 'zi_onelambda'
              call zi_onelambda(x_act, z_act, y, y1, probi, weights, n, 
              ^
/usr/local/clang18/bin/flang-new  -fpic  -O2 -pedantic  -c zipath_nonactive.f -o zipath_nonactive.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o mpath.so activeset.o cfuns.o compute_g.o compute_h.o compute_u.o compute_v.o compute_wt3.o compute_z.o dnbinom.o dpois.o factorial.o gfunc.o glmreg_fit_fortran.o glmregnb_fortran.o gradient.o init.o irglmreg_ad.o irglmreg_fortran.o irglmreg_onelambda.o lmax_zipath.o lmnetGLM.o lmnetGaussian.o loss.o loss2.o loss2_ccsvm.o loss3.o midloop.o midloopGLM.o mpath_init.o mutil.o nclreg_ad.o nclreg_fortran.o nclreg_onelambda.o outloop.o outprod.o theta_ml.o update_wt.o update_wt_ccsvm.o zi_onelambda.o ziloss.o zipath_active.o zipath_nonactive.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mpath/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mpath/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mpath/src'
installing to /data/gannet/ripley/R/packages/tests-clang/mpath.Rcheck/00LOCK-mpath/00new/mpath/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mpath)