* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/mosum.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘mosum/DESCRIPTION’ ... OK * this is package ‘mosum’ version ‘1.2.7’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mosum’ can be installed ... [69s/61s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/mosum-00install.html' for details. * used C++ compiler: ‘clang version 18.1.4’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s/20s] OK * checking Rd files ... NOTE checkRd: (-1) bandwidths.default.Rd:26: Lost braces; missing escapes or markup? 26 | with G_0 = G_1 = max(\code{G.min}, 2/3*\code{d.min}), G_{j+1} = G_{j-1} + G_j (for j = 1, ..., m-1) | ^ checkRd: (-1) bandwidths.default.Rd:26: Lost braces; missing escapes or markup? 26 | with G_0 = G_1 = max(\code{G.min}, 2/3*\code{d.min}), G_{j+1} = G_{j-1} + G_j (for j = 1, ..., m-1) | ^ checkRd: (-1) bandwidths.default.Rd:27: Lost braces; missing escapes or markup? 27 | and m satisfying G_m <= \code{G.max} while G_{m+1} > \code{G.max}. | ^ checkRd: (-1) exhaust_sc.Rd:23: Lost braces; missing escapes or markup? 23 | to the empty set, sc[3,] to {k_1,k_2} [0..011], etc. | ^ checkRd: (-1) extract_sub.Rd:6: Lost braces 6 | S_i = sum{j=k_i+1}^{k_{i+1}}x_i and the partial sums of squared | ^ checkRd: (-1) extract_sub.Rd:6: Lost braces 6 | S_i = sum{j=k_i+1}^{k_{i+1}}x_i and the partial sums of squared | ^ checkRd: (-1) extract_sub.Rd:6: Lost braces; missing escapes or markup? 6 | S_i = sum{j=k_i+1}^{k_{i+1}}x_i and the partial sums of squared | ^ checkRd: (-1) extract_sub.Rd:7: Lost braces 7 | T_i = sum{j=k_i+1}^{k_{i+1}}x_i^2 | ^ checkRd: (-1) extract_sub.Rd:7: Lost braces 7 | T_i = sum{j=k_i+1}^{k_{i+1}}x_i^2 | ^ checkRd: (-1) extract_sub.Rd:7: Lost braces; missing escapes or markup? 7 | T_i = sum{j=k_i+1}^{k_{i+1}}x_i^2 | ^ checkRd: (-1) extract_sub.Rd:8: Lost braces; missing escapes or markup? 8 | between the (sorted) candidates k_i and k_{i+1} in cand. | ^ checkRd: (-1) extract_sub.Rd:9: Lost braces; missing escapes or markup? 9 | Output: data frame with 4 columns k_i | k_{i+1} | S_i | T_i} | ^ checkRd: (-1) extract_sub.Rd:15: Lost braces 15 | S_i = sum{j=k_i+1}^{k_{i+1}}x_i and the partial sums of squared | ^ checkRd: (-1) extract_sub.Rd:15: Lost braces 15 | S_i = sum{j=k_i+1}^{k_{i+1}}x_i and the partial sums of squared | ^ checkRd: (-1) extract_sub.Rd:15: Lost braces; missing escapes or markup? 15 | S_i = sum{j=k_i+1}^{k_{i+1}}x_i and the partial sums of squared | ^ checkRd: (-1) extract_sub.Rd:16: Lost braces 16 | T_i = sum{j=k_i+1}^{k_{i+1}}x_i^2 | ^ checkRd: (-1) extract_sub.Rd:16: Lost braces 16 | T_i = sum{j=k_i+1}^{k_{i+1}}x_i^2 | ^ checkRd: (-1) extract_sub.Rd:16: Lost braces; missing escapes or markup? 16 | T_i = sum{j=k_i+1}^{k_{i+1}}x_i^2 | ^ checkRd: (-1) extract_sub.Rd:17: Lost braces; missing escapes or markup? 17 | between the (sorted) candidates k_i and k_{i+1} in cand. | ^ checkRd: (-1) extract_sub.Rd:18: Lost braces; missing escapes or markup? 18 | Output: data frame with 4 columns k_i | k_{i+1} | S_i | T_i | ^ checkRd: (-1) mosum.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.Rd:42: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.Rd:65: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.stat.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.stat.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.stat.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) mosum.stat.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) multiscale.grid.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) multiscale.grid.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) multiscale.localPrune.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) multiscale.localPrune.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) multiscale.localPrune.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) multiscale.localPrune.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) next_bit_permutation.Rd:7: Lost braces; missing escapes or markup? 7 | Example sequence (2 bits): {0011, 0101, 0110, 1001, 1010, 1100}. | ^ checkRd: (-1) next_bit_permutation.Rd:15: Lost braces; missing escapes or markup? 15 | Example sequence (2 bits): {0011, 0101, 0110, 1001, 1010, 1100}. | ^ checkRd: (-1) plot.mosum.cpts.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.mosum.cpts.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.multiscale.cpts.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.multiscale.cpts.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.multiscale.cpts.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.multiscale.cpts.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot.multiscale.cpts.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) testData.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) testData.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) testData.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) testData.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) testSignal.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) testSignal.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... OK * checking PDF version of manual ... [11s/18s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE