* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/metRology.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘metRology/DESCRIPTION’ ... OK * this is package ‘metRology’ version ‘0.9-28-1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘metRology’ can be installed ... [16s/20s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/metRology-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [39s/48s] OK * checking Rd files ... NOTE checkRd: (-1) bootMSD.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD.Rd:74-75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD.Rd:76-77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD.Rd:80-81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:106-107: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:108-109: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:110: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:111-112: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) bootMSD_class.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot.uncert.Rd:47: Lost braces 47 | absolute value is plotted. For the 'diagonal' terms, these are just eqn{u_i(y)} | ^ checkRd: (-1) plot.uncertMC.Rd:52: Lost braces 52 | present (in sQuote{\dots}), it is set to \code{TRUE}.} | ^ checkRd: (-1) plot.uncertMC.Rd:56: Lost braces 56 | \item{\code{which=4}}{A bar plot of eqn{cor(x_i,y)} if \code{x$y} | ^ checkRd: (-1) plot.uncertMC.Rd:59: Lost braces 59 | \item{\code{which=5}}{A bar plot of eqn{cov(x_i,y)} if \code{x$y} | ^ checkRd: (-1) xs.plot.Rd:146: Lost braces 146 | Options are code{"top"}, code{"topright"}, code{"right"}, code{"bottomright"}, | ^ checkRd: (-1) xs.plot.Rd:146: Lost braces 146 | Options are code{"top"}, code{"topright"}, code{"right"}, code{"bottomright"}, | ^ checkRd: (-1) xs.plot.Rd:146: Lost braces 146 | Options are code{"top"}, code{"topright"}, code{"right"}, code{"bottomright"}, | ^ checkRd: (-1) xs.plot.Rd:146: Lost braces 146 | Options are code{"top"}, code{"topright"}, code{"right"}, code{"bottomright"}, | ^ checkRd: (-1) xs.plot.Rd:147: Lost braces 147 | code{"bottom"}, code{"bottomleft"}, code{"left"} and code{"topleft"}. A vector can be | ^ checkRd: (-1) xs.plot.Rd:147: Lost braces 147 | code{"bottom"}, code{"bottomleft"}, code{"left"} and code{"topleft"}. A vector can be | ^ checkRd: (-1) xs.plot.Rd:147: Lost braces 147 | code{"bottom"}, code{"bottomleft"}, code{"left"} and code{"topleft"}. A vector can be | ^ checkRd: (-1) xs.plot.Rd:147: Lost braces 147 | code{"bottom"}, code{"bottomleft"}, code{"left"} and code{"topleft"}. A vector can be | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking examples ... OK * checking PDF version of manual ... [16s/22s] OK * checking HTML version of manual ... [11s/17s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE