* installing *source* package ‘memisc’ ... ** package ‘memisc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/memisc/src' /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dta-for-R.c -o dta-for-R.o dta-for-R.c:62:10: warning: unused variable 'name' [-Wunused-variable] 62 | SEXP name = getAttrib(s_file,install("file.name")); | ^~~~ dta-for-R.c:171:7: warning: unused variable 'ret' [-Wunused-variable] 171 | int ret = fread(&ds_format,1,1,dtaf->f); | ^~~ dta-for-R.c:189:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 189 | int ret = fread(&byteorder,1,1,dtaf->f); | ^ 3 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dta117-for-R.c -o dta117-for-R.o dta117-for-R.c:111:10: warning: unused variable 'name' [-Wunused-variable] 111 | SEXP name = getAttrib(s_file,install("file.name")); | ^~~~ dta117-for-R.c:160:10: warning: unused variable 'read_len' [-Wunused-variable] 160 | size_t read_len = fread(&target,8,1,dtaf->f); | ^~~~~~~~ dta117-for-R.c:283:7: warning: unused variable 'ret' [-Wunused-variable] 283 | int ret = fread(buf,1,n,f); | ^~~ dta117-for-R.c:321:7: warning: unused variable 'ret' [-Wunused-variable] 321 | int ret = fread(buf,1,len,f); | ^~~ dta117-for-R.c:332:9: warning: unused variable 'header_start' [-Wunused-variable] 332 | off_t header_start = find_in_file(dtaf->f,"
",0,-1); | ^~~~~~~~~~~~ dta117-for-R.c:338:9: warning: unused variable 'K_end' [-Wunused-variable] 338 | off_t K_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~ dta117-for-R.c:340:9: warning: unused variable 'N_end' [-Wunused-variable] 340 | off_t N_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~ dta117-for-R.c:346:9: warning: unused variable 'header_end' [-Wunused-variable] 346 | off_t header_end = find_in_file(dtaf->f,"
",1,-1); | ^~~~~~~~~~ dta117-for-R.c:376:7: warning: unused variable 'l_label' [-Wunused-variable] 376 | int l_label = label[0]; | ^~~~~~~ dta117-for-R.c:377:7: warning: unused variable 'l_timestamp' [-Wunused-variable] 377 | int l_timestamp = timestamp[0]; | ^~~~~~~~~~~ dta117-for-R.c:412:9: warning: unused variable 'map_end' [-Wunused-variable] 412 | off_t map_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~~~ dta117-for-R.c:439:9: warning: unused variable 'vtypes_end' [-Wunused-variable] 439 | off_t vtypes_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~~~~~~ dta117-for-R.c:515:9: warning: unused variable 'vnames_end' [-Wunused-variable] 515 | off_t vnames_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~~~~~~ dta117-for-R.c:517:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 517 | int ret, i, n = dtaf->nvars; | ^ dta117-for-R.c:544:9: warning: unused variable 'slist_end' [-Wunused-variable] 544 | off_t slist_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~~~~~ dta117-for-R.c:568:9: warning: unused variable 'formats_end' [-Wunused-variable] 568 | off_t formats_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~~~~~~~ dta117-for-R.c:570:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 570 | int ret, i, n = dtaf->nvars; | ^ dta117-for-R.c:594:9: warning: unused variable 'vlab_names_end' [-Wunused-variable] 594 | off_t vlab_names_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~~~~~~~~~~ dta117-for-R.c:596:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 596 | int ret, i, n = dtaf->nvars; | ^ dta117-for-R.c:621:9: warning: unused variable 'varlabs_end' [-Wunused-variable] 621 | off_t varlabs_end = find_in_file(dtaf->f,"",1,-1); | ^~~~~~~~~~~ dta117-for-R.c:623:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 623 | int ret, i, n = dtaf->nvars; | ^ dta117-for-R.c:648:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 648 | off_t ret; | ^ dta117-for-R.c:749:10: warning: variable 'v_o' set but not used [-Wunused-but-set-variable] 749 | double v_o; | ^ dta117-for-R.c:863:10: warning: variable 'v_o' set but not used [-Wunused-but-set-variable] 863 | double v_o; | ^ dta117-for-R.c:1004:10: warning: variable 'v_o' set but not used [-Wunused-but-set-variable] 1004 | double v_o; | ^ 25 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dumbswap.c -o dumbswap.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init-memisc.c -o init-memisc.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c numeric_if_possible.c -o numeric_if_possible.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c parsehelpers.c -o parsehelpers.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c pspp-portableStream-for-R.c -o pspp-portableStream-for-R.o pspp-portableStream-for-R.c:337:11: warning: unused variable 'ret' [-Wunused-variable] 337 | int ret = fread((char *)b->buf,1,BUFSIZE,b->f); | ^~~ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c pspp-system-for-R.c -o pspp-system-for-R.o 1 warning generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c readfixed.c -o readfixed.o readfixed.c:86:10: warning: variable 'cur_len' set but not used [-Wunused-but-set-variable] 86 | size_t cur_len; | ^ readfixed.c:183:10: warning: variable 'cur_len' set but not used [-Wunused-but-set-variable] 183 | size_t cur_len; | ^ readfixed.c:266:10: warning: variable 'cur_len' set but not used [-Wunused-but-set-variable] 266 | size_t cur_len; | ^ 3 warnings generated. /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c rofile.c -o rofile.o /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fvisibility=hidden -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c update_data_frame.c -o update_data_frame.o /usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o memisc.so dta-for-R.o dta117-for-R.o dumbswap.o init-memisc.o numeric_if_possible.o parsehelpers.o pspp-portableStream-for-R.o pspp-system-for-R.o readfixed.o rofile.o update_data_frame.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/memisc/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/memisc/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/memisc/src' installing to /data/gannet/ripley/R/packages/tests-clang/memisc.Rcheck/00LOCK-memisc/00new/memisc/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘contrasts’ in package ‘memisc’ in method for ‘description’ with signature ‘"tbl_df"’: no definition for class “tbl_df” in method for ‘codebook’ with signature ‘"tbl_df"’: no definition for class “tbl_df” Creating a generic function for ‘contrasts<-’ from package ‘stats’ in package ‘memisc’ Creating a generic function for ‘as.ordered’ from package ‘base’ in package ‘memisc’ Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘memisc’ Creating a generic function for ‘%in%’ from package ‘base’ in package ‘memisc’ Creating a generic function for ‘sample’ from package ‘base’ in package ‘memisc’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memisc)