* installing *source* package ‘mapfit’ ... ** package ‘mapfit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gamma.cpp -o gamma.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c phase_dist.cpp -o phase_dist.o In file included from phase_dist.cpp:4: In file included from ./phase_gen.h:8: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ In file included from phase_dist.cpp:4: In file included from ./phase_gen.h:9: ./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable] 12 | const int m = traits1::nrow(A); | ^ ./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 18 | int maxi = 0; | ^ ./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 45 | int maxi = 0; | ^ ./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable] 77 | const int m = traits1::nrow(A); | ^ ./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 85 | int maxi = 0; | ^ ./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable] 117 | const int m = traits1::nrow(A); | ^ ./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable] 118 | const int n = traits1::ncol(A); | ^ ./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 126 | int maxi = 0; | ^ ./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable] 193 | const int m = traits1::nrow(A); | ^ ./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable] 211 | const int n = traits1::ncol(A); | ^ ./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable] 236 | const int m = traits1::nrow(A); | ^ ./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable] 262 | const int m = traits1::nrow(A); | ^ In file included from phase_dist.cpp:4: ./phase_gen.h:230:10: warning: unused variable 'scale' [-Wunused-variable] 230 | double scale; | ^~~~~ ./phase_gen.h:232:10: warning: unused variable 'tllf' [-Wunused-variable] 232 | double tllf = 0.0; | ^~~~ ./phase_gen.h:443:10: warning: unused variable 'scale' [-Wunused-variable] 443 | double scale; | ^~~~~ ./phase_gen.h:445:10: warning: unused variable 'tllf' [-Wunused-variable] 445 | double tllf = 0.0; | ^~~~ 20 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_phase_gen.cpp -o emfit_phase_gen.o In file included from emfit_phase_gen.cpp:4: In file included from ./phase_gen.h:8: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ In file included from emfit_phase_gen.cpp:4: In file included from ./phase_gen.h:9: ./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable] 12 | const int m = traits1::nrow(A); | ^ ./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 18 | int maxi = 0; | ^ ./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 45 | int maxi = 0; | ^ ./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable] 77 | const int m = traits1::nrow(A); | ^ ./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 85 | int maxi = 0; | ^ ./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable] 117 | const int m = traits1::nrow(A); | ^ ./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable] 118 | const int n = traits1::ncol(A); | ^ ./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 126 | int maxi = 0; | ^ ./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable] 193 | const int m = traits1::nrow(A); | ^ ./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable] 211 | const int n = traits1::ncol(A); | ^ ./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable] 236 | const int m = traits1::nrow(A); | ^ ./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable] 262 | const int m = traits1::nrow(A); | ^ In file included from emfit_phase_gen.cpp:4: ./phase_gen.h:230:10: warning: unused variable 'scale' [-Wunused-variable] 230 | double scale; | ^~~~~ ./phase_gen.h:232:10: warning: unused variable 'tllf' [-Wunused-variable] 232 | double tllf = 0.0; | ^~~~ ./phase_gen.h:443:10: warning: unused variable 'scale' [-Wunused-variable] 443 | double scale; | ^~~~~ ./phase_gen.h:445:10: warning: unused variable 'tllf' [-Wunused-variable] 445 | double tllf = 0.0; | ^~~~ 20 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_phase_cf1.cpp -o emfit_phase_cf1.o In file included from emfit_phase_cf1.cpp:4: In file included from ./phase_cf1.h:5: In file included from ./phase_gen.h:8: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ In file included from emfit_phase_cf1.cpp:4: In file included from ./phase_cf1.h:5: In file included from ./phase_gen.h:9: ./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable] 12 | const int m = traits1::nrow(A); | ^ ./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 18 | int maxi = 0; | ^ ./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 45 | int maxi = 0; | ^ ./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable] 77 | const int m = traits1::nrow(A); | ^ ./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 85 | int maxi = 0; | ^ ./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable] 117 | const int m = traits1::nrow(A); | ^ ./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable] 118 | const int n = traits1::ncol(A); | ^ ./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 126 | int maxi = 0; | ^ ./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable] 193 | const int m = traits1::nrow(A); | ^ ./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable] 211 | const int n = traits1::ncol(A); | ^ ./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable] 236 | const int m = traits1::nrow(A); | ^ ./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable] 262 | const int m = traits1::nrow(A); | ^ In file included from emfit_phase_cf1.cpp:4: In file included from ./phase_cf1.h:5: ./phase_gen.h:230:10: warning: unused variable 'scale' [-Wunused-variable] 230 | double scale; | ^~~~~ ./phase_gen.h:232:10: warning: unused variable 'tllf' [-Wunused-variable] 232 | double tllf = 0.0; | ^~~~ ./phase_gen.h:443:10: warning: unused variable 'scale' [-Wunused-variable] 443 | double scale; | ^~~~~ ./phase_gen.h:445:10: warning: unused variable 'tllf' [-Wunused-variable] 445 | double tllf = 0.0; | ^~~~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_phase_herlang.cpp -o emfit_phase_herlang.o 20 warnings generated. In file included from emfit_phase_herlang.cpp:4: In file included from ./phase_herlang.h:7: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ In file included from emfit_phase_herlang.cpp:4: ./phase_herlang.h:356:11: warning: unused variable 'alpha' [-Wunused-variable] 356 | double* alpha = trait2::value(model.alpha); | ^~~~~ ./phase_herlang.h:378:11: warning: unused variable 'alpha' [-Wunused-variable] 378 | double* alpha = trait2::value(model.alpha); | ^~~~~ 6 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_map_gen.cpp -o emfit_map_gen.o In file included from emfit_map_gen.cpp:4: In file included from ./map_gen.h:8: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ In file included from emfit_map_gen.cpp:4: In file included from ./map_gen.h:10: ./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable] 12 | const int m = traits1::nrow(A); | ^ ./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 18 | int maxi = 0; | ^ ./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 45 | int maxi = 0; | ^ ./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable] 77 | const int m = traits1::nrow(A); | ^ ./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 85 | int maxi = 0; | ^ ./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable] 117 | const int m = traits1::nrow(A); | ^ ./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable] 118 | const int n = traits1::ncol(A); | ^ ./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 126 | int maxi = 0; | ^ ./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable] 193 | const int m = traits1::nrow(A); | ^ ./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable] 211 | const int n = traits1::ncol(A); | ^ ./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable] 236 | const int m = traits1::nrow(A); | ^ ./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable] 262 | const int m = traits1::nrow(A); | ^ In file included from emfit_map_gen.cpp:4: ./map_gen.h:256:17: warning: unused variable 'eb' [-Wunused-variable] 256 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:262:11: warning: unused variable 'alpha' [-Wunused-variable] 262 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ ./map_gen.h:320:11: warning: unused variable 'j' [-Wunused-variable] 320 | int j = colind1[z] - base1; | ^ ./map_gen.h:293:17: warning: unused variable 'eb' [-Wunused-variable] 293 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:304:11: warning: unused variable 'alpha' [-Wunused-variable] 304 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ ./map_gen.h:337:17: warning: unused variable 'eb' [-Wunused-variable] 337 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:348:11: warning: unused variable 'alpha' [-Wunused-variable] 348 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ ./map_gen.h:411:9: warning: unused variable 'j' [-Wunused-variable] 411 | int j = colind1[z] - base1; | ^ ./map_gen.h:381:17: warning: unused variable 'eb' [-Wunused-variable] 381 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:394:11: warning: unused variable 'alpha' [-Wunused-variable] 394 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ 26 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_map_erhmm.cpp -o emfit_map_erhmm.o In file included from emfit_map_erhmm.cpp:4: In file included from ./map_erhmm.h:9: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ In file included from emfit_map_erhmm.cpp:4: ./map_erhmm.h:114:17: warning: unused variable 'eb' [-Wunused-variable] 114 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ 5 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c emfit_map_gmmpp.cpp -o emfit_map_gmmpp.o In file included from emfit_map_gmmpp.cpp:4: In file included from ./map_gmmpp.h:7: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ In file included from emfit_map_gmmpp.cpp:4: In file included from ./map_gmmpp.h:8: ./unif.h:12:13: warning: unused variable 'm' [-Wunused-variable] 12 | const int m = traits1::nrow(A); | ^ ./unif.h:18:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 18 | int maxi = 0; | ^ ./unif.h:45:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 45 | int maxi = 0; | ^ ./unif.h:77:13: warning: unused variable 'm' [-Wunused-variable] 77 | const int m = traits1::nrow(A); | ^ ./unif.h:85:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 85 | int maxi = 0; | ^ ./unif.h:117:13: warning: unused variable 'm' [-Wunused-variable] 117 | const int m = traits1::nrow(A); | ^ ./unif.h:118:13: warning: unused variable 'n' [-Wunused-variable] 118 | const int n = traits1::ncol(A); | ^ ./unif.h:126:7: warning: variable 'maxi' set but not used [-Wunused-but-set-variable] 126 | int maxi = 0; | ^ ./unif.h:193:13: warning: unused variable 'm' [-Wunused-variable] 193 | const int m = traits1::nrow(A); | ^ ./unif.h:211:13: warning: unused variable 'n' [-Wunused-variable] 211 | const int n = traits1::ncol(A); | ^ ./unif.h:236:13: warning: unused variable 'm' [-Wunused-variable] 236 | const int m = traits1::nrow(A); | ^ ./unif.h:262:13: warning: unused variable 'm' [-Wunused-variable] 262 | const int m = traits1::nrow(A); | ^ In file included from emfit_map_gmmpp.cpp:4: In file included from ./map_gmmpp.h:12: ./map_gen.h:256:17: warning: unused variable 'eb' [-Wunused-variable] 256 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:262:11: warning: unused variable 'alpha' [-Wunused-variable] 262 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ ./map_gen.h:320:11: warning: unused variable 'j' [-Wunused-variable] 320 | int j = colind1[z] - base1; | ^ ./map_gen.h:293:17: warning: unused variable 'eb' [-Wunused-variable] 293 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:304:11: warning: unused variable 'alpha' [-Wunused-variable] 304 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ ./map_gen.h:337:17: warning: unused variable 'eb' [-Wunused-variable] 337 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:348:11: warning: unused variable 'alpha' [-Wunused-variable] 348 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ ./map_gen.h:411:9: warning: unused variable 'j' [-Wunused-variable] 411 | int j = colind1[z] - base1; | ^ ./map_gen.h:381:17: warning: unused variable 'eb' [-Wunused-variable] 381 | const double* eb = stride_vector_traits::value(eres.eb); | ^~ ./map_gen.h:394:11: warning: unused variable 'alpha' [-Wunused-variable] 394 | double* alpha = stride_vector_traits::value(model.alpha); | ^~~~~ In file included from emfit_map_gmmpp.cpp:4: ./map_gmmpp.h:56:15: warning: variable 'dji' set but not used [-Wunused-but-set-variable] 56 | double dij, dji; | ^ ./map_gmmpp.h:174:16: warning: unused variable 'tmax' [-Wunused-variable] 174 | const double tmax = data.maxtime; | ^~~~ emfit_map_gmmpp.cpp:63:8: warning: unused variable 'm' [-Wunused-variable] 63 | auto m = tdat.length(); | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gth.cpp -o gth.o 29 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o In file included from gth.cpp:4: In file included from ./gth.h:6: ./blas.h:95:13: warning: unused variable 'n' [-Wunused-variable] 95 | const int n = traits1::ncol(A); | ^ ./blas.h:116:13: warning: unused variable 'm' [-Wunused-variable] 116 | const int m = traits1::nrow(A); | ^ ./blas.h:138:13: warning: unused variable 'm' [-Wunused-variable] 138 | const int m = traits1::nrow(A); | ^ ./blas.h:139:13: warning: unused variable 'n' [-Wunused-variable] 139 | const int n = traits1::ncol(A); | ^ 4 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o mapfit.so gamma.o phase_dist.o emfit_phase_gen.o emfit_phase_cf1.o emfit_phase_herlang.o emfit_map_gen.o emfit_map_erhmm.o emfit_map_gmmpp.o gth.o RcppExports.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/mapfit/src' installing to /data/gannet/ripley/R/packages/tests-clang/mapfit.Rcheck/00LOCK-mapfit/00new/mapfit/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapfit)