* installing *source* package ‘landsepi’ ... ** package ‘landsepi’ successfully unpacked and MD5 sums checked ** using staged installation configure: /data/gannet/ripley/R/R-clang checking whether to build debug version... no checking whether to build profiling version... no configure: /data/gannet/ripley/R/R-clang checking for Rcpp package... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether /usr/local/clang18/bin/clang++ -std=gnu++17 accepts -g... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_blas_dgemm in -lgsl... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/landsepi/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Basic_patho.cpp -o Basic_patho.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Croptype.cpp -o Croptype.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Cultivar.cpp -o Cultivar.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Gene.cpp -o Gene.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Model.cpp -o Model.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o Model.cpp:1271:10: warning: unused variable 'duration' [-Wunused-variable] 1271 | auto duration = duration_cast(stop - start); | ^~~~~~~~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Treatment.cpp -o Treatment.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c functions.cpp -o functions.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gprof.cpp -o gprof.o 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c initialisation.cpp -o initialisation.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/testthat/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c printReadWrite.cpp -o printReadWrite.o /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o landsepi.so Basic_patho.o Croptype.o Cultivar.o Gene.o Model.o RcppExports.o Treatment.o functions.o gprof.o initialisation.o printReadWrite.o -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -lgsl -lgslcblas -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/landsepi/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/landsepi/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/landsepi/src' installing to /data/gannet/ripley/R/packages/tests-clang/landsepi.Rcheck/00LOCK-landsepi/00new/landsepi/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (landsepi)