* installing *source* package ‘kgrams’ ... ** package ‘kgrams’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/kgrams/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c DictionaryR.cpp -o DictionaryR.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c Smoothing.cpp -o Smoothing.o Smoothing.cpp:701:16: warning: unused variable 'sum' [-Wunused-variable] 701 | double sum = prob_a + prob_b + prob_eos + prob_unk; | ^~~ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c SmoothingR.cpp -o SmoothingR.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c UtilitiesR.cpp -o UtilitiesR.o In file included from SmoothingR.cpp:1: In file included from ./SmoothingR.h:9: In file included from ./kgramFreqsR.h:4: In file included from /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp.h:46: /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'Smoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'SBOSmoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c kgramFreqs.cpp -o kgramFreqs.o /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'AddkSmoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'MLSmoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'KNSmoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'mKNSmoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'AbsSmoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'WBSmoother' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'SBOSmootherR' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'MLSmootherR' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'AddkSmootherR' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c kgramFreqsR.cpp -o kgramFreqsR.o /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'KNSmootherR' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'mKNSmootherR' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'AbsSmootherR' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'WBSmootherR' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 31 | delete obj; | ^ /data/gannet/ripley/R/test-clang/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here 54 | void Finalizer(T*) = standard_delete_finalizer, | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppProgress/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c special_tokensR.cpp -o special_tokensR.o 15 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o kgrams.so DictionaryR.o RcppExports.o Smoothing.o SmoothingR.o UtilitiesR.o kgramFreqs.o kgramFreqsR.o special_tokensR.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/kgrams/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/kgrams/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/kgrams/src' installing to /data/gannet/ripley/R/packages/tests-clang/kgrams.Rcheck/00LOCK-kgrams/00new/kgrams/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kgrams)