* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/icrf.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘icrf/DESCRIPTION’ ... OK * this is package ‘icrf’ version ‘2.0.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘icrf’ can be installed ... [13s/25s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/icrf-00install.html' for details. * used C compiler: ‘clang version 18.1.4’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/17s] OK * checking Rd files ... NOTE checkRd: (-1) getTree.icrf.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) getTree.icrf.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) getTree.icrf.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) getTree.icrf.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) getTree.icrf.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) getTree.icrf.Rd:31-33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:169: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:170-172: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:171: Lost braces 171 | \item{quasihonest}, \code{bandwith}, and the subsample ratio | ^ checkRd: (-1) icrf.Rd:173-174: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:175-176: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:177-178: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:179: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:180-181: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:182-183: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:184-185: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:186: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:187-190: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:191-193: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:194: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:195: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:196: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:197-198: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:199: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:199: Lost braces; missing escapes or markup? 199 | \item{intervals}{\code{n} by {2} matrix of the intervals.} | ^ checkRd: (-1) icrf.Rd:200-213: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) icrf.Rd:200-203: Lost braces 200 | \item{proximity}{if \code{proximity=TRUE} {if \code{proximity=TRUE} when | ^ checkRd: (-1) icrf.Rd:204: Lost braces 204 | \item{inbag}{if \code{keep.inbag=TRUE} provides a matrix of in-bag indicators | ^ checkRd: (-1) icrf.Rd:204-205: Lost braces 204 | \item{inbag}{if \code{keep.inbag=TRUE} provides a matrix of in-bag indicators | ^ checkRd: (-1) icrf.Rd:206: Lost braces 206 | \item{runtime}{start and end times and the elapsed time.} | ^ checkRd: (-1) icrf.Rd:206: Lost braces 206 | \item{runtime}{start and end times and the elapsed time.} | ^ checkRd: (-1) icrf.Rd:207: Lost braces 207 | \item{test}{if test set is given (through the \code{xtest} or additionally | ^ checkRd: (-1) icrf.Rd:207-212: Lost braces 207 | \item{test}{if test set is given (through the \code{xtest} or additionally | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [13s/20s] OK * checking PDF version of manual ... [10s/14s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE