* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/hBayesDM.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘hBayesDM/DESCRIPTION’ ... OK * this is package ‘hBayesDM’ version ‘1.2.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hBayesDM’ can be installed ... [4m/11m] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/hBayesDM-00install.html' for details. * used C++ compiler: ‘clang version 18.1.4’ * checking C++ specification ... NOTE Specified C++14: please drop specification unless essential * checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: R 2.6Mb extdata 1.3Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [6s/15s] OK * checking whether the package can be loaded with stated dependencies ... [6s/16s] OK * checking whether the package can be unloaded cleanly ... [6s/15s] OK * checking whether the namespace can be loaded with stated dependencies ... [6s/15s] OK * checking whether the namespace can be unloaded cleanly ... [6s/12s] OK * checking loading without being on the library search path ... [12s/26s] OK * checking whether startup messages can be suppressed ... [6s/16s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [132s/308s] OK * checking Rd files ... NOTE checkRd: (-1) alt_delta.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"alt_delta"}).} | ^ checkRd: (-1) alt_gamma.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"alt_gamma"}).} | ^ checkRd: (-1) bandit2arm_delta.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bandit2arm_delta"}).} | ^ checkRd: (-1) bandit4arm2_kalman_filter.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bandit4arm2_kalman_filter"}).} | ^ checkRd: (-1) bandit4arm_2par_lapse.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bandit4arm_2par_lapse"}).} | ^ checkRd: (-1) bandit4arm_4par.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bandit4arm_4par"}).} | ^ checkRd: (-1) bandit4arm_lapse.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bandit4arm_lapse"}).} | ^ checkRd: (-1) bandit4arm_lapse_decay.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bandit4arm_lapse_decay"}).} | ^ checkRd: (-1) bandit4arm_singleA_lapse.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bandit4arm_singleA_lapse"}).} | ^ checkRd: (-1) banditNarm_2par_lapse.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"banditNarm_2par_lapse"}).} | ^ checkRd: (-1) banditNarm_4par.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"banditNarm_4par"}).} | ^ checkRd: (-1) banditNarm_delta.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"banditNarm_delta"}).} | ^ checkRd: (-1) banditNarm_kalman_filter.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"banditNarm_kalman_filter"}).} | ^ checkRd: (-1) banditNarm_lapse.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"banditNarm_lapse"}).} | ^ checkRd: (-1) banditNarm_lapse_decay.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"banditNarm_lapse_decay"}).} | ^ checkRd: (-1) banditNarm_singleA_lapse.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"banditNarm_singleA_lapse"}).} | ^ checkRd: (-1) bart_ewmv.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bart_ewmv"}).} | ^ checkRd: (-1) bart_par4.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"bart_par4"}).} | ^ checkRd: (-1) cgt_cm.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"cgt_cm"}).} | ^ checkRd: (-1) choiceRT_ddm.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"choiceRT_ddm"}).} | ^ checkRd: (-1) choiceRT_ddm_single.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"choiceRT_ddm_single"}).} | ^ checkRd: (-1) cra_exp.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"cra_exp"}).} | ^ checkRd: (-1) cra_linear.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"cra_linear"}).} | ^ checkRd: (-1) dbdm_prob_weight.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"dbdm_prob_weight"}).} | ^ checkRd: (-1) dd_cs.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"dd_cs"}).} | ^ checkRd: (-1) dd_cs_single.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"dd_cs_single"}).} | ^ checkRd: (-1) dd_exp.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"dd_exp"}).} | ^ checkRd: (-1) dd_hyperbolic.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"dd_hyperbolic"}).} | ^ checkRd: (-1) dd_hyperbolic_single.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"dd_hyperbolic_single"}).} | ^ checkRd: (-1) gng_m1.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"gng_m1"}).} | ^ checkRd: (-1) gng_m2.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"gng_m2"}).} | ^ checkRd: (-1) gng_m3.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"gng_m3"}).} | ^ checkRd: (-1) gng_m4.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"gng_m4"}).} | ^ checkRd: (-1) igt_orl.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"igt_orl"}).} | ^ checkRd: (-1) igt_pvl_decay.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"igt_pvl_decay"}).} | ^ checkRd: (-1) igt_pvl_delta.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"igt_pvl_delta"}).} | ^ checkRd: (-1) igt_vpp.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"igt_vpp"}).} | ^ checkRd: (-1) peer_ocu.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"peer_ocu"}).} | ^ checkRd: (-1) prl_ewa.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_ewa"}).} | ^ checkRd: (-1) prl_fictitious.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_fictitious"}).} | ^ checkRd: (-1) prl_fictitious_multipleB.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_fictitious_multipleB"}).} | ^ checkRd: (-1) prl_fictitious_rp.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_fictitious_rp"}).} | ^ checkRd: (-1) prl_fictitious_rp_woa.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_fictitious_rp_woa"}).} | ^ checkRd: (-1) prl_fictitious_woa.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_fictitious_woa"}).} | ^ checkRd: (-1) prl_rp.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_rp"}).} | ^ checkRd: (-1) prl_rp_multipleB.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"prl_rp_multipleB"}).} | ^ checkRd: (-1) pstRT_ddm.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"pstRT_ddm"}).} | ^ checkRd: (-1) pstRT_rlddm1.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"pstRT_rlddm1"}).} | ^ checkRd: (-1) pstRT_rlddm6.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"pstRT_rlddm6"}).} | ^ checkRd: (-1) pst_Q.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"pst_Q"}).} | ^ checkRd: (-1) pst_gainloss_Q.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"pst_gainloss_Q"}).} | ^ checkRd: (-1) ra_noLA.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"ra_noLA"}).} | ^ checkRd: (-1) ra_noRA.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"ra_noRA"}).} | ^ checkRd: (-1) ra_prospect.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"ra_prospect"}).} | ^ checkRd: (-1) rdt_happiness.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"rdt_happiness"}).} | ^ checkRd: (-1) task2AFC_sdt.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"task2AFC_sdt"}).} | ^ checkRd: (-1) ts_par4.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"ts_par4"}).} | ^ checkRd: (-1) ts_par6.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"ts_par6"}).} | ^ checkRd: (-1) ts_par7.Rd:85: Lost braces 85 | \item{model}{Character value that is the name of the model (\\code{"ts_par7"}).} | ^ checkRd: (-1) ug_bayes.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"ug_bayes"}).} | ^ checkRd: (-1) ug_delta.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"ug_delta"}).} | ^ checkRd: (-1) wcs_sql.Rd:74: Lost braces 74 | \item{model}{Character value that is the name of the model (\\code{"wcs_sql"}).} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [13s/30s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [17s/38s] OK Running ‘testthat.R’ [16s/37s] * checking PDF version of manual ... [21s/42s] OK * checking HTML version of manual ... [15s/35s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 4 NOTEs