* installing *source* package ‘gllvm’ ... ** package ‘gllvm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/TMB/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gllvm.cpp -o gllvm.o In file included from gllvm.cpp:2: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gllvm.cpp:2: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 310 | if((random(0)==0)){ | ~~~~~~~~~^~~ gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning 310 | if((random(0)==0)){ | ~ ^ ~ gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment 310 | if((random(0)==0)){ | ^~ | = gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 310 | if((random(0)==0)){ | ~~~~~~~~~^~~ /data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:1277:6: note: in instantiation of member function 'objective_function::operator()' requested here 1277 | F(); // Run through user template (modifies reportvector) | ^ gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning 310 | if((random(0)==0)){ | ~ ^ ~ gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment 310 | if((random(0)==0)){ | ^~ | = gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 310 | if((random(0)==0)){ | ~~~~~~~~~^~~ /data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:2031:34: note: in instantiation of member function 'objective_function::operator()' requested here 2031 | PROTECT( res = asSEXP( pf->operator()() ) ); | ^ gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning 310 | if((random(0)==0)){ | ~ ^ ~ gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment 310 | if((random(0)==0)){ | ^~ | = gllvm.cpp:1815:23: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 1815 | if((y(i,j)==0)){ | ~~~~~~^~~ gllvm.cpp:1815:23: note: remove extraneous parentheses around the comparison to silence this warning 1815 | if((y(i,j)==0)){ | ~ ^ ~ gllvm.cpp:1815:23: note: use '=' to turn this equality comparison into an assignment 1815 | if((y(i,j)==0)){ | ^~ | = gllvm.cpp:1819:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 1819 | } else if((y(i,j)==1)){ | ~~~~~~^~~ gllvm.cpp:1819:30: note: remove extraneous parentheses around the comparison to silence this warning 1819 | } else if((y(i,j)==1)){ | ~ ^ ~ gllvm.cpp:1819:30: note: use '=' to turn this equality comparison into an assignment 1819 | } else if((y(i,j)==1)){ | ^~ | = 8 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o gllvm.so gllvm.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src' installing to /data/gannet/ripley/R/packages/tests-clang/gllvm.Rcheck/00LOCK-gllvm/00new/gllvm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gllvm)