* installing *source* package ‘gllvm’ ...
** package ‘gllvm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/data/gannet/ripley/R/test-clang/TMB/include' -I'/data/gannet/ripley/R/test-clang/RcppEigen/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gllvm.cpp -o gllvm.o
In file included from gllvm.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from gllvm.cpp:2:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
310 | if((random(0)==0)){
| ~~~~~~~~~^~~
gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning
310 | if((random(0)==0)){
| ~ ^ ~
gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment
310 | if((random(0)==0)){
| ^~
| =
gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
310 | if((random(0)==0)){
| ~~~~~~~~~^~~
/data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:1277:6: note: in instantiation of member function 'objective_function<TMBad::global::ad_aug>::operator()' requested here
1277 | F(); // Run through user template (modifies reportvector)
| ^
gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning
310 | if((random(0)==0)){
| ~ ^ ~
gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment
310 | if((random(0)==0)){
| ^~
| =
gllvm.cpp:310:16: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
310 | if((random(0)==0)){
| ~~~~~~~~~^~~
/data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:2031:34: note: in instantiation of member function 'objective_function<double>::operator()' requested here
2031 | PROTECT( res = asSEXP( pf->operator()() ) );
| ^
gllvm.cpp:310:16: note: remove extraneous parentheses around the comparison to silence this warning
310 | if((random(0)==0)){
| ~ ^ ~
gllvm.cpp:310:16: note: use '=' to turn this equality comparison into an assignment
310 | if((random(0)==0)){
| ^~
| =
gllvm.cpp:1815:23: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1815 | if((y(i,j)==0)){
| ~~~~~~^~~
gllvm.cpp:1815:23: note: remove extraneous parentheses around the comparison to silence this warning
1815 | if((y(i,j)==0)){
| ~ ^ ~
gllvm.cpp:1815:23: note: use '=' to turn this equality comparison into an assignment
1815 | if((y(i,j)==0)){
| ^~
| =
gllvm.cpp:1819:30: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1819 | } else if((y(i,j)==1)){
| ~~~~~~^~~
gllvm.cpp:1819:30: note: remove extraneous parentheses around the comparison to silence this warning
1819 | } else if((y(i,j)==1)){
| ~ ^ ~
gllvm.cpp:1819:30: note: use '=' to turn this equality comparison into an assignment
1819 | } else if((y(i,j)==1)){
| ^~
| =
8 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o gllvm.so gllvm.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gllvm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/gllvm.Rcheck/00LOCK-gllvm/00new/gllvm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gllvm)