* installing *source* package ‘geocmeans’ ... ** package ‘geocmeans’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c FCM_functions.cpp -o FCM_functions.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c GFCM_functions.cpp -o GFCM_functions.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o FCM_functions.cpp:211:9: warning: unused variable 'k' [-Wunused-variable] 211 | int i,k,j; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c focal_cpp.cpp -o focal_cpp.o 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c jaccard_idx.cpp -o jaccard_idx.o /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c moran_for_rasters.cpp -o moran_for_rasters.o focal_cpp.cpp:244:10: warning: unused variable 'distsums' [-Wunused-variable] 244 | double distsums; | ^~~~~~~~ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c shared_functions.cpp -o shared_functions.o moran_for_rasters.cpp:83:9: warning: unused variable 'weight' [-Wunused-variable] 83 | float weight = 1.0; | ^~~~~~ moran_for_rasters.cpp:164:9: warning: unused variable 'weight' [-Wunused-variable] 164 | float weight = 1.0; | ^~~~~~ moran_for_rasters.cpp:356:7: warning: variable 'N' set but not used [-Wunused-but-set-variable] 356 | int N = 0; | ^ moran_for_rasters.cpp:479:7: warning: variable 'N' set but not used [-Wunused-but-set-variable] 479 | int N = 0; | ^ moran_for_rasters.cpp:480:7: warning: variable 'wr' set but not used [-Wunused-but-set-variable] 480 | int wr,wc; | ^ moran_for_rasters.cpp:480:10: warning: variable 'wc' set but not used [-Wunused-but-set-variable] 480 | int wr,wc; | ^ moran_for_rasters.cpp:613:27: warning: unused variable 'nn' [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:613:30: warning: unused variable 'ii' [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:613:33: warning: unused variable 'jj' [-Wunused-variable] 613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj; | ^~ moran_for_rasters.cpp:614:7: warning: unused variable 'N' [-Wunused-variable] 614 | int N = 0; | ^ moran_for_rasters.cpp:615:7: warning: variable 'wr' set but not used [-Wunused-but-set-variable] 615 | int wr,wc; | ^ moran_for_rasters.cpp:615:10: warning: variable 'wc' set but not used [-Wunused-but-set-variable] 615 | int wr,wc; | ^ moran_for_rasters.cpp:616:7: warning: unused variable 'counter' [-Wunused-variable] 616 | int counter = 0; | ^~~~~~~ moran_for_rasters.cpp:625:10: warning: unused variable 'euc_dist' [-Wunused-variable] 625 | double euc_dist, dij; | ^~~~~~~~ 14 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o geocmeans.so FCM_functions.o GFCM_functions.o RcppExports.o focal_cpp.o jaccard_idx.o moran_for_rasters.o shared_functions.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src' installing to /data/gannet/ripley/R/packages/tests-clang/geocmeans.Rcheck/00LOCK-geocmeans/00new/geocmeans/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geocmeans)