* installing *source* package ‘geocmeans’ ...
** package ‘geocmeans’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘clang version 18.1.4’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src'
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c FCM_functions.cpp -o FCM_functions.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c GFCM_functions.cpp -o GFCM_functions.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o
FCM_functions.cpp:211:9: warning: unused variable 'k' [-Wunused-variable]
211 | int i,k,j;
| ^
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c focal_cpp.cpp -o focal_cpp.o
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c jaccard_idx.cpp -o jaccard_idx.o
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c moran_for_rasters.cpp -o moran_for_rasters.o
focal_cpp.cpp:244:10: warning: unused variable 'distsums' [-Wunused-variable]
244 | double distsums;
| ^~~~~~~~
1 warning generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -I'/data/gannet/ripley/R/test-clang/RcppArmadillo/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c shared_functions.cpp -o shared_functions.o
moran_for_rasters.cpp:83:9: warning: unused variable 'weight' [-Wunused-variable]
83 | float weight = 1.0;
| ^~~~~~
moran_for_rasters.cpp:164:9: warning: unused variable 'weight' [-Wunused-variable]
164 | float weight = 1.0;
| ^~~~~~
moran_for_rasters.cpp:356:7: warning: variable 'N' set but not used [-Wunused-but-set-variable]
356 | int N = 0;
| ^
moran_for_rasters.cpp:479:7: warning: variable 'N' set but not used [-Wunused-but-set-variable]
479 | int N = 0;
| ^
moran_for_rasters.cpp:480:7: warning: variable 'wr' set but not used [-Wunused-but-set-variable]
480 | int wr,wc;
| ^
moran_for_rasters.cpp:480:10: warning: variable 'wc' set but not used [-Wunused-but-set-variable]
480 | int wr,wc;
| ^
moran_for_rasters.cpp:613:27: warning: unused variable 'nn' [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:613:30: warning: unused variable 'ii' [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:613:33: warning: unused variable 'jj' [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:614:7: warning: unused variable 'N' [-Wunused-variable]
614 | int N = 0;
| ^
moran_for_rasters.cpp:615:7: warning: variable 'wr' set but not used [-Wunused-but-set-variable]
615 | int wr,wc;
| ^
moran_for_rasters.cpp:615:10: warning: variable 'wc' set but not used [-Wunused-but-set-variable]
615 | int wr,wc;
| ^
moran_for_rasters.cpp:616:7: warning: unused variable 'counter' [-Wunused-variable]
616 | int counter = 0;
| ^~~~~~~
moran_for_rasters.cpp:625:10: warning: unused variable 'euc_dist' [-Wunused-variable]
625 | double euc_dist, dij;
| ^~~~~~~~
14 warnings generated.
/usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o geocmeans.so FCM_functions.o GFCM_functions.o RcppExports.o focal_cpp.o jaccard_idx.o moran_for_rasters.o shared_functions.o -fopenmp -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geocmeans/src'
installing to /data/gannet/ripley/R/packages/tests-clang/geocmeans.Rcheck/00LOCK-geocmeans/00new/geocmeans/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geocmeans)