Install log for 'gensvm'

* installing *source* package ‘gensvm’ ...
** package ‘gensvm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 18.1.4’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gensvm/src'
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm_wrapper.c -o gensvm_wrapper.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_base.c -o gensvm/src/gensvm_base.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_checks.c -o gensvm/src/gensvm_checks.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_cmdarg.c -o gensvm/src/gensvm_cmdarg.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_consistency.c -o gensvm/src/gensvm_consistency.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_copy.c -o gensvm/src/gensvm_copy.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_cross_validation.c -o gensvm/src/gensvm_cross_validation.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_cv_util.c -o gensvm/src/gensvm_cv_util.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_debug.c -o gensvm/src/gensvm_debug.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_grid.c -o gensvm/src/gensvm_grid.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_gridsearch.c -o gensvm/src/gensvm_gridsearch.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_init.c -o gensvm/src/gensvm_init.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_io.c -o gensvm/src/gensvm_io.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_kernel.c -o gensvm/src/gensvm_kernel.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_memory.c -o gensvm/src/gensvm_memory.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_optimize.c -o gensvm/src/gensvm_optimize.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_predict.c -o gensvm/src/gensvm_predict.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_print.c -o gensvm/src/gensvm_print.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_queue.c -o gensvm/src/gensvm_queue.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_r_utils.c -o gensvm/src/gensvm_r_utils.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_rand.c -o gensvm/src/gensvm_rand.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_simplex.c -o gensvm/src/gensvm_simplex.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_sparse.c -o gensvm/src/gensvm_sparse.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_strutil.c -o gensvm/src/gensvm_strutil.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_sv.c -o gensvm/src/gensvm_sv.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_task.c -o gensvm/src/gensvm_task.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_timer.c -o gensvm/src/gensvm_timer.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_train.c -o gensvm/src/gensvm_train.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_update.c -o gensvm/src/gensvm_update.o
/usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -Igensvm/include/  -isystem /usr/local/clang18/include -I/usr/local/clang/include   -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic  -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3  -c gensvm/src/gensvm_zv.c -o gensvm/src/gensvm_zv.o
/usr/local/clang18/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o gensvm.so gensvm_wrapper.o gensvm/src/gensvm_base.o gensvm/src/gensvm_checks.o gensvm/src/gensvm_cmdarg.o gensvm/src/gensvm_consistency.o gensvm/src/gensvm_copy.o gensvm/src/gensvm_cross_validation.o gensvm/src/gensvm_cv_util.o gensvm/src/gensvm_debug.o gensvm/src/gensvm_grid.o gensvm/src/gensvm_gridsearch.o gensvm/src/gensvm_init.o gensvm/src/gensvm_io.o gensvm/src/gensvm_kernel.o gensvm/src/gensvm_memory.o gensvm/src/gensvm_optimize.o gensvm/src/gensvm_predict.o gensvm/src/gensvm_print.o gensvm/src/gensvm_queue.o gensvm/src/gensvm_r_utils.o gensvm/src/gensvm_rand.o gensvm/src/gensvm_simplex.o gensvm/src/gensvm_sparse.o gensvm/src/gensvm_strutil.o gensvm/src/gensvm_sv.o gensvm/src/gensvm_task.o gensvm/src/gensvm_timer.o gensvm/src/gensvm_train.o gensvm/src/gensvm_update.o gensvm/src/gensvm_zv.o -L/data/gannet/ripley/R/R-clang/lib -lRlapack -L/data/gannet/ripley/R/R-clang/lib -lRblas -lFortran_main -lFortranRuntime -lFortranDecimal -lm
mv gensvm.so gensvm_wrapper.so
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gensvm/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/gensvm/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/gensvm/src'
installing to /data/gannet/ripley/R/packages/tests-clang/gensvm.Rcheck/00LOCK-gensvm/00new/gensvm/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gensvm)