* installing *source* package ‘genie’ ... ** package ‘genie’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘clang version 18.1.4’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/genie/src' /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c disjoint_sets.cpp -o disjoint_sets.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hclust2_common.cpp -o hclust2_common.o In file included from hclust2_common.cpp:20: ./hclust2_common.h:355:11: warning: private field 'n' is not used [-Wunused-private-field] 355 | size_t n; | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hclust2_distance.cpp -o hclust2_distance.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hclust2_mstbased_gini.cpp -o hclust2_mstbased_gini.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hclust2_nnbased_single.cpp -o hclust2_nnbased_single.o In file included from hclust2_mstbased_gini.cpp:21: In file included from ./hclust2_mstbased_gini.h:32: ./hclust2_common.h:355:11: warning: private field 'n' is not used [-Wunused-private-field] 355 | size_t n; | ^ In file included from hclust2_nnbased_single.cpp:21: In file included from ./hclust2_nnbased_single.h:32: ./hclust2_common.h:355:11: warning: private field 'n' is not used [-Wunused-private-field] 355 | size_t n; | ^ 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hclust2_rcpp_gini.cpp -o hclust2_rcpp_gini.o 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hclust2_result.cpp -o hclust2_result.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c hclust2_vptree_single.cpp -o hclust2_vptree_single.o /usr/local/clang18/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang18/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c init.cpp -o init.o In file included from hclust2_rcpp_gini.cpp:20: In file included from ./hclust2_vptree_gini.h:27: In file included from ./hclust2_nnbased_gini.h:32: ./hclust2_common.h:355:11: warning: private field 'n' is not used [-Wunused-private-field] 355 | size_t n; | ^ 1 warning generated. In file included from hclust2_result.cpp:20: In file included from ./hclust2_result.h:25: ./hclust2_common.h:355:11: warning: private field 'n' is not used [-Wunused-private-field] 355 | size_t n; | ^ In file included from hclust2_vptree_single.cpp:21: In file included from ./hclust2_vptree_single.h:27: In file included from ./hclust2_nnbased_single.h:32: ./hclust2_common.h:355:11: warning: private field 'n' is not used [-Wunused-private-field] 355 | size_t n; | ^ 1 warning generated. 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++11 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o genie.so RcppExports.o disjoint_sets.o hclust2_common.o hclust2_distance.o hclust2_mstbased_gini.o hclust2_nnbased_single.o hclust2_rcpp_gini.o hclust2_result.o hclust2_vptree_single.o init.o -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/genie/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/genie/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/genie/src' installing to /data/gannet/ripley/R/packages/tests-clang/genie.Rcheck/00LOCK-genie/00new/genie/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genie)