* installing *source* package ‘geepack’ ... ** package ‘geepack’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 18.1.4’ using C++ compiler: ‘clang version 18.1.4’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src' /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c famstr.cc -o famstr.o famstr.cc:1:17: warning: using directive refers to implicitly-defined namespace 'std' 1 | using namespace std; | ^ In file included from famstr.cc:3: ../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std' 4 | using namespace std; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c gee2.cc -o gee2.o In file included from gee2.cc:17: In file included from ../inst/include/gee2.h:4: ../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std' 4 | using namespace std; | ^ ../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable] 260 | Subscript MN = M*N; | ^~ 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c geesubs.cc -o geesubs.o geesubs.cc:10:17: warning: using directive refers to implicitly-defined namespace 'std' 10 | using namespace std; | ^ In file included from geesubs.cc:12: ../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std' 4 | using namespace std; | ^ /usr/local/clang18/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c init.c -o init.o ../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable] 260 | Subscript MN = M*N; | ^~ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c inter.cc -o inter.o inter.cc:1:17: warning: using directive refers to implicitly-defined namespace 'std' 1 | using namespace std; | ^ In file included from inter.cc:3: ../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std' 4 | using namespace std; | ^ ../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable] 260 | Subscript MN = M*N; | ^~ ../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable] 260 | Subscript MN = M*N; | ^~ 3 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c ordgee.cc -o ordgee.o In file included from ordgee.cc:18: In file included from ../inst/include/ordgee.h:5: ../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std' 4 | using namespace std; | ^ 3 warnings generated. 2 warnings generated. ../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable] 260 | Subscript MN = M*N; | ^~ 2 warnings generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c param.cc -o param.o param.cc:1:17: warning: using directive refers to implicitly-defined namespace 'std' 1 | using namespace std; | ^ In file included from param.cc:3: ../inst/include/tntsupp.h:4:17: warning: using directive refers to implicitly-defined namespace 'std' 4 | using namespace std; | ^ /usr/local/clang18/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I../inst/include -DNDEBUG -isystem /usr/local/clang18/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -c utils.cc -o utils.o ../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable] 260 | Subscript MN = M*N; | ^~ In file included from utils.cc:6: ../inst/include/tntsupp.h:260:15: warning: unused variable 'MN' [-Wunused-variable] 260 | Subscript MN = M*N; | ^~ 3 warnings generated. 1 warning generated. /usr/local/clang18/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang18/lib -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o geepack.so famstr.o gee2.o geesubs.o init.o inter.o ordgee.o param.o utils.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/geepack/src' installing to /data/gannet/ripley/R/packages/tests-clang/geepack.Rcheck/00LOCK-geepack/00new/geepack/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geepack)