* using log directory ‘/data/gannet/ripley/R/packages/tests-clang/gamlss.dist.Rcheck’ * using R Under development (unstable) (2024-04-24 r86484) * using platform: x86_64-pc-linux-gnu * R was compiled by clang version 18.1.4 flang-new version 18.1.4 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘gamlss.dist/DESCRIPTION’ ... OK * this is package ‘gamlss.dist’ version ‘6.1-1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gamlss.dist’ can be installed ... [93s/124s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-clang/gamlss.dist-00install.html' for details. * used C compiler: ‘clang version 18.1.4’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [209s/292s] OK * checking Rd files ... NOTE checkRd: (-1) GEOM.Rd:56: Lost braces 56 | for eqn{y=0,1,2,3,...} and \eqn{\mu>0}, see pp 473-474 of Rigby et al. (2019). | ^ checkRd: (-1) GU.rd:61: Lost braces 61 | \emph{Journal of Statistical Software}, Vol. \bold{23}, Issue 7, Dec 2007, \\doi{10.18637/jss.v023.i07}. | ^ checkRd: (-1) IG.Rd:55: Lost braces 55 | \emph{Journal of Statistical Software}, Vol. \bold{23}, Issue 7, Dec 2007, \\doi{10.18637/jss.v023.i07}. | ^ checkRd: (-1) LOGITNO.Rd:55: Lost braces 55 | \emph{Journal of Statistical Software}, Vol. \bold{23}, Issue 7, Dec 2007, \\doi{10.18637/jss.v023.i07}. | ^ checkRd: (-1) Multinomial.Rd:69: Lost braces 69 | The function \code{MULTIN()} can be used instead of code{MN3()}, \code{MN4()} and \code{MN5()} by specifying the number of levels of the response. Note that \code{MULTIN(2)} will produce a binomial fit. | ^ checkRd: (-1) PARETO2.Rd:38: Lost braces 38 | The parameters are \code{mu} and \code{sigma} in both functions but the parameterasation different. The \code{mu} is identical for both \code{PARETO2()} and \code{PARETO2o()}. The \code{sigma} in \code{PARETO2o()} is the inverse of the \code{sigma} in code{PARETO2()} and coresponse to the usual parameter \code{alpha} of the Patreto distribution. The functions \code{dPARETO2}, \code{pPARETO2}, \code{qPARETO2} and \code{rPARETO2} define the density, distribution function, quantile function and random generation for the \code{PARETO2} parameterization of the Pareto type 2 distribution while the functions \code{dPARETO2o}, \code{pPARETO2o}, \code{qPARETO2o} and \code{rPARETO2o} define the density, distribution function, quantile function and random generation for the original \code{PARETO2o} parameterization of the Pareto type 2 distribution | ^ checkRd: (-1) PIG.Rd:31: Lost braces 31 | generation for the Poisson-inverse Gaussian \code{PIG()}, distribution. Also code{dPIG2}, \code{pPIG2}, \code{qPIG2} and \code{rPIG2} are the equivalent functions for code{PIG2()} | ^ checkRd: (-1) PIG.Rd:31: Lost braces 31 | generation for the Poisson-inverse Gaussian \code{PIG()}, distribution. Also code{dPIG2}, \code{pPIG2}, \code{qPIG2} and \code{rPIG2} are the equivalent functions for code{PIG2()} | ^ checkRd: (-1) SI.Rd:70: Lost braces 70 | \emph{Journal of Statistical Software}, Vol. \bold{23}, Issue 7, Dec 2007, \\doi{10.18637/jss.v023.i07}. | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Undeclared package ‘gamlss’ in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... [24s/32s] OK * checking PDF version of manual ... [22s/28s] OK * checking HTML version of manual ... [16s/23s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs